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The map label for this gene is ygcF [H]

Identifier: 227081536

GI number: 227081536

Start: 1412183

End: 1412920

Strand: Direct

Name: ygcF [H]

Synonym: VCM66_1320

Alternate gene names: 227081536

Gene position: 1412183-1412920 (Clockwise)

Preceding gene: 227081534

Following gene: 227081537

Centisome position: 48.82

GC content: 47.97

Gene sequence:

>738_bases
TTGACCTCGATCGCTATCTCCATTATGGTCTGCCACCTGCAACTGTTTATCCATGTTAGGTCGTTCATCTTGTACCGAAT
AAATGAAATGTTTGAGATTATCCAAGGCGAAGGCGTGTTTACTGGTGTTCCCGCGGTCTTTGTGCGCTTGCAAGGCTGCC
CAGTCGGTTGTGCTTGGTGTGATACTAAGCAGACTTGGGAAACATTAGACTCAGACCAAACCTCATTCTCACAAATTTTG
CTGAAAACCAATGATGCGCCAACTTGGTGTCAGGCCACTGCGCAAGAGGTGGTTCAACGCTACCAAGCGCAAGGTTATCA
GGCAAAACATATCGTCATTACGGGCGGTGAGCCCTGCATTTACGATTTGACCGAGTTAACTCAAGCGTTTGAAGCAATGG
GTTGCCGATGCCAAATTGAAACCAGTGGTACTTACGAAGTCTGTGCGACCGAGAACACTTGGGTGACAGTGTCACCCAAG
GTCGCGATGAAAGGGAAGTTACCGATTCTGGATTCAGCCTTGCAACGTGCCAACGAAATTAAACATCCCGTGGCGACCGA
GAAAGATATCGACAATCTTGATGAGTTGCTTGCACGAGCTCAGGTCAGTGCTCAAACCGCAATCGCTTTGCAGCCGATTA
GCCAAAAGCCGCGTGCGACAGAGTTGTGCATTCGCACCTGTATTGCTCGCAATTGGCGTTTATCTATCCAAACCCATAAA
TATCTCAACATTGCTTAA

Upstream 100 bases:

>100_bases
GGCGGTATATGACGAACCTAGATGCTCTATGTAATTAGGGTGAACAACGGTCGCCAATATCGCTGAAGCTTGAACTAAGA
AGGGGATAGACGCATTTAAT

Downstream 100 bases:

>100_bases
AGGGAGCGCATCATGAAAAAAGCCGTCGTCGTGTTCAGTGGTGGGCAAGATTCAACCACCTGTTTAGTTCAGGCGTTAAA
AGAGTTTGATGAAGTGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTSIAISIMVCHLQLFIHVRSFILYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQIL
LKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTYEVCATENTWVTVSPK
VAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQTAIALQPISQKPRATELCIRTCIARNWRLSIQTHK
YLNIA

Sequences:

>Translated_245_residues
MTSIAISIMVCHLQLFIHVRSFILYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQIL
LKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTYEVCATENTWVTVSPK
VAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQTAIALQPISQKPRATELCIRTCIARNWRLSIQTHK
YLNIA
>Mature_244_residues
TSIAISIMVCHLQLFIHVRSFILYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWCDTKQTWETLDSDQTSFSQILL
KTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQIETSGTYEVCATENTWVTVSPKV
AMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLARAQVSAQTAIALQPISQKPRATELCIRTCIARNWRLSIQTHKY
LNIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=62.4434389140271, Blast_Score=290, Evalue=6e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27400; Mature: 27269

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIAISIMVCHLQLFIHVRSFILYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHEEEECCCCCEEEEC
DTKQTWETLDSDQTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCI
CCHHHHHHHCCCHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCE
YDLTELTQAFEAMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEI
EHHHHHHHHHHHCCCEEEEECCCCEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHHH
KHPVATEKDIDNLDELLARAQVSAQTAIALQPISQKPRATELCIRTCIARNWRLSIQTHK
CCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECE
YLNIA
EEECC
>Mature Secondary Structure 
TSIAISIMVCHLQLFIHVRSFILYRINEMFEIIQGEGVFTGVPAVFVRLQGCPVGCAWC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHEEEECCCCCEEEEC
DTKQTWETLDSDQTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCI
CCHHHHHHHCCCHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCE
YDLTELTQAFEAMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEI
EHHHHHHHHHHHCCCEEEEECCCCEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHHH
KHPVATEKDIDNLDELLARAQVSAQTAIALQPISQKPRATELCIRTCIARNWRLSIQTHK
CCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECE
YLNIA
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]