Click here to switch to the map view.

The map label for this gene is yccA [C]

Identifier: 227081529

GI number: 227081529

Start: 1404474

End: 1405145

Strand: Reverse

Name: yccA [C]

Synonym: VCM66_1313

Alternate gene names: 227081529

Gene position: 1405145-1404474 (Counterclockwise)

Preceding gene: 227081530

Following gene: 227081528

Centisome position: 48.58

GC content: 44.49

Gene sequence:

>672_bases
ATGAATACGCCAATGTTTACCAGAACTTCCAGCTTGGAACGTACTCTTGAAACCAACAAGGTTTTGAAGAATACCTACTT
CCTGCTTTCTATGACCCTTGTCACCAGTGCGATTGCAGCAATGGCGACTATGGCTATCGGCATTTCTCCTATCGTTGCTT
TGGTGATGCAGTTGGCTGCCATTGGCATTTTGTTTTTCGTGATGCCAAAAGCGATTAACTCATCATCAGGCCTAGTATGG
ACGTTCGTCTTTACTGGACTGATGGGAGGAGCTCTTGGCCCTATGCTGAATTTCTATGCGGCGATGCCAAATGGCCCAAT
CGTTATTGCGCAAGCACTCGGCCTGACTGGCATGGTGTTTTTAGGCCTGTCGGCTTACACCATTACCAGCAAGAAAGATT
TCTCTTTCATGCGTAATTTCCTGTTTGCTGGCTTGATCATTGTGATTGTTGCGGCATTGATTAACATCTTTGTTGGCTCA
ACGGTAGCTCATCTGGCTATCAGTAGCGTTTCTGCACTGGTATTTTCGGGTTTCATTCTGTTTGATACCAGCCGTATTGT
GCGTGGTGAAGAAACCAACTATATCTCAGCAACGATTTCTATGTACTTGAATATCCTGAACCTGTTCACTAGCTTGTTGA
GCATTCTGGGTATCATGAACAATAACGATTAA

Upstream 100 bases:

>100_bases
TGATTATTATTGAGTTAGACAGCACAAGGGGCTTGAAATTTATGGCATTGAGCCTCATAACTGTCCCTGTAGCAATCAGT
ACTTTTAATAGAGGAAAAGT

Downstream 100 bases:

>100_bases
TCGCTTAGATTGTTTTACGGTAAGCCCGATGAATTCATCGGGCTTTTTTATGCTTGAGCCACACCTTGAGCTTCGCTACC
CTATGCGCAAATTGACAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNTPMFTRTSSLERTLETNKVLKNTYFLLSMTLVTSAIAAMATMAIGISPIVALVMQLAAIGILFFVMPKAINSSSGLVW
TFVFTGLMGGALGPMLNFYAAMPNGPIVIAQALGLTGMVFLGLSAYTITSKKDFSFMRNFLFAGLIIVIVAALINIFVGS
TVAHLAISSVSALVFSGFILFDTSRIVRGEETNYISATISMYLNILNLFTSLLSILGIMNNND

Sequences:

>Translated_223_residues
MNTPMFTRTSSLERTLETNKVLKNTYFLLSMTLVTSAIAAMATMAIGISPIVALVMQLAAIGILFFVMPKAINSSSGLVW
TFVFTGLMGGALGPMLNFYAAMPNGPIVIAQALGLTGMVFLGLSAYTITSKKDFSFMRNFLFAGLIIVIVAALINIFVGS
TVAHLAISSVSALVFSGFILFDTSRIVRGEETNYISATISMYLNILNLFTSLLSILGIMNNND
>Mature_223_residues
MNTPMFTRTSSLERTLETNKVLKNTYFLLSMTLVTSAIAAMATMAIGISPIVALVMQLAAIGILFFVMPKAINSSSGLVW
TFVFTGLMGGALGPMLNFYAAMPNGPIVIAQALGLTGMVFLGLSAYTITSKKDFSFMRNFLFAGLIIVIVAALINIFVGS
TVAHLAISSVSALVFSGFILFDTSRIVRGEETNYISATISMYLNILNLFTSLLSILGIMNNND

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family

Homologues:

Organism=Homo sapiens, GI116812579, Length=175, Percent_Identity=34.2857142857143, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1787205, Length=216, Percent_Identity=46.7592592592593, Blast_Score=169, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24653221, Length=142, Percent_Identity=30.2816901408451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24653223, Length=142, Percent_Identity=30.2816901408451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI45551091, Length=142, Percent_Identity=30.2816901408451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI17647735, Length=142, Percent_Identity=30.2816901408451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24653225, Length=142, Percent_Identity=30.2816901408451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24653227, Length=142, Percent_Identity=30.2816901408451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24646768, Length=124, Percent_Identity=30.6451612903226, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1358_VIBCH (Q9KSA1)

Other databases:

- EMBL:   AE003852
- PIR:   D82210
- RefSeq:   NP_231002.1
- GeneID:   2614812
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC1358
- TIGR:   VC_1358
- HOGENOM:   HBG595196
- OMA:   TYALLSM
- ProtClustDB:   CLSK794095
- InterPro:   IPR006214
- PANTHER:   PTHR23291

Pfam domain/function: PF01027 UPF0005

EC number: NA

Molecular weight: Translated: 23913; Mature: 23913

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x269d0f9c)-; HASH(0x26d723bc)-; HASH(0x26dcbe4c)-; HASH(0x25589078)-; HASH(0x26b29260)-; HASH(0x26b3e184)-; HASH(0x26dd25bc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPMFTRTSSLERTLETNKVLKNTYFLLSMTLVTSAIAAMATMAIGISPIVALVMQLAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGILFFVMPKAINSSSGLVWTFVFTGLMGGALGPMLNFYAAMPNGPIVIAQALGLTGMVF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHH
LGLSAYTITSKKDFSFMRNFLFAGLIIVIVAALINIFVGSTVAHLAISSVSALVFSGFIL
HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDTSRIVRGEETNYISATISMYLNILNLFTSLLSILGIMNNND
EECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MNTPMFTRTSSLERTLETNKVLKNTYFLLSMTLVTSAIAAMATMAIGISPIVALVMQLAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGILFFVMPKAINSSSGLVWTFVFTGLMGGALGPMLNFYAAMPNGPIVIAQALGLTGMVF
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHH
LGLSAYTITSKKDFSFMRNFLFAGLIIVIVAALINIFVGSTVAHLAISSVSALVFSGFIL
HHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDTSRIVRGEETNYISATISMYLNILNLFTSLLSILGIMNNND
EECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301