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The map label for this gene is yqjE [H]

Identifier: 227081514

GI number: 227081514

Start: 1387373

End: 1388479

Strand: Reverse

Name: yqjE [H]

Synonym: VCM66_1298

Alternate gene names: 227081514

Gene position: 1388479-1387373 (Counterclockwise)

Preceding gene: 227081519

Following gene: 227081505

Centisome position: 48.0

GC content: 49.05

Gene sequence:

>1107_bases
ATGAGTCTGATTAATACCCAACGCCTTGTTGACCACTTCCTGCAACTGATTCAGATCGATAGCGAATCGGGCAATGAAAA
AAAGATTGCTGAAACGCTCGCGGAGCAACTAGGCGAACTTGGTTTCACCGTACATAAACTCCCTGTTCCGGCGGAGGTGT
CAAACGGCTTTAACCTGTATGCCCGCCTAGAAGGCACACTCAATGACAGTATTCTGTTTAGTTGCCACATGGATACGGTT
AAACCGGGTATCGGCATTGAGCCTGTGATTGAAGATGGCATTATCCGTTCCAAAGGCAACACGATTTTGGGTGGCGACGA
CAAATCTGGCATTGCCGCGATCCTTGAAGCGGTACGTGTTCTGCGTGATAGCCAGCAAGCGCACAAAACCATTGAGATTG
CTTTCACTGTGCATGAAGAAGGCGGTCTGAAAGGTTCTGAGCATTTTGATATGAGTAAGGTGCAAGCAGAGAAAGCGATT
GTTCTCGACACAGGCGGCCCAATCGGCACTATCGTGCGTGCAGCACCGGGCCAGCAAAAAATCGTCGCACTGATCAAAGG
TAAACCCGCTCATGCTGGTTTGGTACCGGAAGATGGGATCAGCGCCATTGCGGTGGCCGCTGATGCAATTACTCAAATGA
AACTGCTGCGAATTGACGAAGAAACCACGGCTAACATCGGTATTGTGCAGGGCGGTCAAGCGACGAACATTGTGATGCCT
GAGCTGAAAATCGTGGCGGAAGCGCGTTCACTCAACGATGCCAAACTCGAAGCGCAAGTTCAGCACATGATTGAAACTTT
TGAACGTGCCGCGGAAAAGCATGGCGCAACCGTTGAGATTGAATCGACTCGCGCTTACAACGCCTTTAAGTTGGAAGAAG
ATAACGCGCATATCCAAGCGATCAAAGCGAGCTTTGAAACAATTGGTATTGAGCCGAAAACCAAACTGAGTGGTGGTGGC
AGCGATGCCAATAATTTCAATGCGAAAGGGTTAACTACGGTAAACCTCTCAACCGGTATGGCTAAAGTGCATACTACTGA
AGAGTACATCGCGATTGCGGATATGGTGAAAATTGCCGAATTCGTCTGCGCTTACACTACCGCCTAA

Upstream 100 bases:

>100_bases
CTATTTCCCTCTGCTTTTCAGGCTTTTTTTGATTTAACGCATCATCAGTCAAGTCAATTGCAGGCATGGTGACAACTTCT
GTTCCCTAAGAGGTATTCCT

Downstream 100 bases:

>100_bases
TCAAGTACTTGAGTCATCAATAAAAACCGGAAGCAAATGGCTTCCGGTTTTTATTTAAACTGATTTTAATATGTGGAACT
TACTATCGGAGCTTTTAAGC

Product: peptidase, M20A family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSLINTQRLVDHFLQLIQIDSESGNEKKIAETLAEQLGELGFTVHKLPVPAEVSNGFNLYARLEGTLNDSILFSCHMDTV
KPGIGIEPVIEDGIIRSKGNTILGGDDKSGIAAILEAVRVLRDSQQAHKTIEIAFTVHEEGGLKGSEHFDMSKVQAEKAI
VLDTGGPIGTIVRAAPGQQKIVALIKGKPAHAGLVPEDGISAIAVAADAITQMKLLRIDEETTANIGIVQGGQATNIVMP
ELKIVAEARSLNDAKLEAQVQHMIETFERAAEKHGATVEIESTRAYNAFKLEEDNAHIQAIKASFETIGIEPKTKLSGGG
SDANNFNAKGLTTVNLSTGMAKVHTTEEYIAIADMVKIAEFVCAYTTA

Sequences:

>Translated_368_residues
MSLINTQRLVDHFLQLIQIDSESGNEKKIAETLAEQLGELGFTVHKLPVPAEVSNGFNLYARLEGTLNDSILFSCHMDTV
KPGIGIEPVIEDGIIRSKGNTILGGDDKSGIAAILEAVRVLRDSQQAHKTIEIAFTVHEEGGLKGSEHFDMSKVQAEKAI
VLDTGGPIGTIVRAAPGQQKIVALIKGKPAHAGLVPEDGISAIAVAADAITQMKLLRIDEETTANIGIVQGGQATNIVMP
ELKIVAEARSLNDAKLEAQVQHMIETFERAAEKHGATVEIESTRAYNAFKLEEDNAHIQAIKASFETIGIEPKTKLSGGG
SDANNFNAKGLTTVNLSTGMAKVHTTEEYIAIADMVKIAEFVCAYTTA
>Mature_367_residues
SLINTQRLVDHFLQLIQIDSESGNEKKIAETLAEQLGELGFTVHKLPVPAEVSNGFNLYARLEGTLNDSILFSCHMDTVK
PGIGIEPVIEDGIIRSKGNTILGGDDKSGIAAILEAVRVLRDSQQAHKTIEIAFTVHEEGGLKGSEHFDMSKVQAEKAIV
LDTGGPIGTIVRAAPGQQKIVALIKGKPAHAGLVPEDGISAIAVAADAITQMKLLRIDEETTANIGIVQGGQATNIVMPE
LKIVAEARSLNDAKLEAQVQHMIETFERAAEKHGATVEIESTRAYNAFKLEEDNAHIQAIKASFETIGIEPKTKLSGGGS
DANNFNAKGLTTVNLSTGMAKVHTTEEYIAIADMVKIAEFVCAYTTA

Specific function: Could be a peptidase [H]

COG id: COG2195

COG function: function code E; Di- and tripeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1787372, Length=409, Percent_Identity=25.9168704156479, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17551016, Length=240, Percent_Identity=27.9166666666667, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR010162
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.4.11.4 [C]

Molecular weight: Translated: 39327; Mature: 39196

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLINTQRLVDHFLQLIQIDSESGNEKKIAETLAEQLGELGFTVHKLPVPAEVSNGFNLY
CCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEE
ARLEGTLNDSILFSCHMDTVKPGIGIEPVIEDGIIRSKGNTILGGDDKSGIAAILEAVRV
EEEECCCCCEEEEEEECCCCCCCCCCCCHHCCCEEECCCCEEECCCCCCHHHHHHHHHHH
LRDSQQAHKTIEIAFTVHEEGGLKGSEHFDMSKVQAEKAIVLDTGGPIGTIVRAAPGQQK
HHCCHHHCEEEEEEEEEECCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHEEECCCCCCE
IVALIKGKPAHAGLVPEDGISAIAVAADAITQMKLLRIDEETTANIGIVQGGQATNIVMP
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCEEECC
ELKIVAEARSLNDAKLEAQVQHMIETFERAAEKHGATVEIESTRAYNAFKLEEDNAHIQA
CHHEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCEEEE
IKASFETIGIEPKTKLSGGGSDANNFNAKGLTTVNLSTGMAKVHTTEEYIAIADMVKIAE
EEHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHH
FVCAYTTA
HHHHHCCC
>Mature Secondary Structure 
SLINTQRLVDHFLQLIQIDSESGNEKKIAETLAEQLGELGFTVHKLPVPAEVSNGFNLY
CCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEE
ARLEGTLNDSILFSCHMDTVKPGIGIEPVIEDGIIRSKGNTILGGDDKSGIAAILEAVRV
EEEECCCCCEEEEEEECCCCCCCCCCCCHHCCCEEECCCCEEECCCCCCHHHHHHHHHHH
LRDSQQAHKTIEIAFTVHEEGGLKGSEHFDMSKVQAEKAIVLDTGGPIGTIVRAAPGQQK
HHCCHHHCEEEEEEEEEECCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHEEECCCCCCE
IVALIKGKPAHAGLVPEDGISAIAVAADAITQMKLLRIDEETTANIGIVQGGQATNIVMP
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCEEECC
ELKIVAEARSLNDAKLEAQVQHMIETFERAAEKHGATVEIESTRAYNAFKLEEDNAHIQA
CHHEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCEEEE
IKASFETIGIEPKTKLSGGGSDANNFNAKGLTTVNLSTGMAKVHTTEEYIAIADMVKIAE
EEHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHH
FVCAYTTA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Aminopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]