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The map label for this gene is yjcC [C]

Identifier: 227081383

GI number: 227081383

Start: 1243189

End: 1245303

Strand: Direct

Name: yjcC [C]

Synonym: VCM66_1166

Alternate gene names: 227081383

Gene position: 1243189-1245303 (Clockwise)

Preceding gene: 227081382

Following gene: 227081385

Centisome position: 42.98

GC content: 45.25

Gene sequence:

>2115_bases
TTGAGCCTCTTTAGCATGCTGAGTTTTAATAAGTACTTACCCACGGTGAGAAAAAATGAGTTAACCAAGGTTTCTCAATA
CCTTGTTTCAGCGATGCATTCAATTCGTGAAGGGATGGTGTGGCTGATCCCGTGCTTAATGATCTCTTCCTTTGTCCTGT
TTATTGCCAGCATGGGCGAGCTGTTTAGCGGTGGCCGTCCTGAATGGGTTTTGATTTTGTATCGCGCGAACCAAGTGATC
GCCGAAACCTTTCCTTATTTGATGACGGCCACCATCTCATATCTGCTGGCCATGCATTGGCATTTGCCACGTCCCCCGAT
TGCGCTATTGAGCATCATTTATTTGGTGGTCTCATCAGCTTCGGTGAGTGCCGAGAATAATTTGCCAACGTTTCAAATCA
TCACAGCACTGATCACACCGATTTATGCTATTCCGCTGATAGCTTGGTTGATGCGTTATCCGGTCTTACACTTAACCCGC
TCAAACAGTGCTGGCAGCATAGTACGTGAGTCACTCAATCTTGTGTTGCCTGCGGCACTGACGGCCATGGTTGTGGTGGG
CATAAATTTAATTTTATTTGGCCCGATCACTCGTCAGATCTTTGCAAGCTTGATGCATTTTGATTATGCCAATGACCCTT
ATTCCTTCGGCTTAACATTCGCCAGCCTAAACTCGCTGCTTTGGTTTTTCGGCATCCACGGTTATTACGCTTTATTACCT
TTAGTGGAATTATTGCAAGAAGCGAGTAGGCTGTCCGAGTCCTATTTTTTGATCGGTGAAACCGCCCCTTATCCAATGAA
TTTATCTTTTATGGGCACGTTTGTGTTTATCGGAGGCAGCGGTGCAACCTTTTCTTTAGCTTTAGCTATCCTATTGTTCG
GAAAGCAGAAAAACATTCGCTTGCTCGCGATTGCCAGTCTTCCGATCGGGCTGATTAATGTGAATGAGATTTTCCTATTT
GGTTTGCCTCTGATCCTCAATCCGCGTTTATTCTTCCCCTTTCTCCTCGCACCTATGGTGAATGTGGTGGTATCACTCTG
GGCGGTAGAGTCTGGTTGGGTCGCGTACCCGAGTGTTTCAGTGCCGTTCAATAGCCCGATTTTTCTCAATGCTTGGATTG
CGACTAGCGGTGACTGGAATGGATTACTCTTGCAATTGGTCAATATTGTTCTCGGTTGTCTCTTATATTTGCCCTCTGTA
CTGCGTCTTAATGAACAATATGGCCAGCAAACGATTCGAATTCCTTCGTTGGATACTATGTATACTCGCCGTCAAGAAGA
GGCGGCTCATCTGCAAGATGATCCCATTGCGTTGGCGCAGAAACGGGAGCGTGAGCAGCTTAAAGTTGAACAGCAACTAC
AGATGATGAGCAGCAAAGAGTTTTGTTTAGAGTATCAACCGCAAGTTTGCCACCGAACAGGACAAGTGATTGGTTGTGAG
GCATTAATTCGAGCCAAAGATCAACAAGATAACATTCTATCACCGGCAACCTTTTTACCCTCCCTTGCCAAAGCTGGGTT
GATGAAGGAGATGGATTTATGGGTAGTGAAACAGGCTACGAGTGATGTTCGTAAACTCACGAATGTCGGAGTTTATGTGC
CTGTCAGTATTAATCTGACGGCAGAAACCTTGATGGATTTGACCGTAATGGCTCAGATTGAAGAGATCATTCGTTCAGTG
GCAGGATTAATTCATATTGAACTGACGGAAGAGAGTTTACTGGCGGATGAACAGCGTTTGACTTGGGTGTTTAACCAACT
TCATCAATTAGGCGTCAAAATTTACATTGATGATTTTGGTACCGGTTACTCTTCTCTCAGCTATCTGCACCGTTTTGATG
TCGATGGCATCAAGATTGATCGCTCTTTTGTGCTGGCTTTGGTCTCTGAAAAAGGGCGCAAAGTCTTTGCCAATTTACAG
CTCGTGGCTCATTCCCTTGAGCTGGAAACGATCATCGAAGGAGTCGAAACCCAAGAGCAGTTAGACGCGATGGGAGATGA
ATACCCATTCTCTGTACAAGGTTGGTTTTACAGTAAATCTCTGAATCGTGGTGATTTCGTCGAGTTTGTACAGCGTCGAA
ACGCTTCTAAAACAGTCCCAGTTGAGGCGCAATAA

Upstream 100 bases:

>100_bases
TGGTTAGTCTTTTTTGAGAATAAGCAGTAAGTATAAGTTTTAACCGCTGAATCATTTATTGATAAAGAAATTAGTGTGCT
AAGTTTTTAATACGCGTCAC

Downstream 100 bases:

>100_bases
GCTCATCAAATTGTTTGCCAATAAAAGGCAAAATCGCATCTGCGACCGGTTTAAGCTGTTTATCGATGTAGTGCTGATAA
TCGATAGGGCTTTTGGAATA

Product: EAL family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 703

Protein sequence:

>704_residues
MSLFSMLSFNKYLPTVRKNELTKVSQYLVSAMHSIREGMVWLIPCLMISSFVLFIASMGELFSGGRPEWVLILYRANQVI
AETFPYLMTATISYLLAMHWHLPRPPIALLSIIYLVVSSASVSAENNLPTFQIITALITPIYAIPLIAWLMRYPVLHLTR
SNSAGSIVRESLNLVLPAALTAMVVVGINLILFGPITRQIFASLMHFDYANDPYSFGLTFASLNSLLWFFGIHGYYALLP
LVELLQEASRLSESYFLIGETAPYPMNLSFMGTFVFIGGSGATFSLALAILLFGKQKNIRLLAIASLPIGLINVNEIFLF
GLPLILNPRLFFPFLLAPMVNVVVSLWAVESGWVAYPSVSVPFNSPIFLNAWIATSGDWNGLLLQLVNIVLGCLLYLPSV
LRLNEQYGQQTIRIPSLDTMYTRRQEEAAHLQDDPIALAQKREREQLKVEQQLQMMSSKEFCLEYQPQVCHRTGQVIGCE
ALIRAKDQQDNILSPATFLPSLAKAGLMKEMDLWVVKQATSDVRKLTNVGVYVPVSINLTAETLMDLTVMAQIEEIIRSV
AGLIHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFGTGYSSLSYLHRFDVDGIKIDRSFVLALVSEKGRKVFANLQ
LVAHSLELETIIEGVETQEQLDAMGDEYPFSVQGWFYSKSLNRGDFVEFVQRRNASKTVPVEAQ

Sequences:

>Translated_704_residues
MSLFSMLSFNKYLPTVRKNELTKVSQYLVSAMHSIREGMVWLIPCLMISSFVLFIASMGELFSGGRPEWVLILYRANQVI
AETFPYLMTATISYLLAMHWHLPRPPIALLSIIYLVVSSASVSAENNLPTFQIITALITPIYAIPLIAWLMRYPVLHLTR
SNSAGSIVRESLNLVLPAALTAMVVVGINLILFGPITRQIFASLMHFDYANDPYSFGLTFASLNSLLWFFGIHGYYALLP
LVELLQEASRLSESYFLIGETAPYPMNLSFMGTFVFIGGSGATFSLALAILLFGKQKNIRLLAIASLPIGLINVNEIFLF
GLPLILNPRLFFPFLLAPMVNVVVSLWAVESGWVAYPSVSVPFNSPIFLNAWIATSGDWNGLLLQLVNIVLGCLLYLPSV
LRLNEQYGQQTIRIPSLDTMYTRRQEEAAHLQDDPIALAQKREREQLKVEQQLQMMSSKEFCLEYQPQVCHRTGQVIGCE
ALIRAKDQQDNILSPATFLPSLAKAGLMKEMDLWVVKQATSDVRKLTNVGVYVPVSINLTAETLMDLTVMAQIEEIIRSV
AGLIHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFGTGYSSLSYLHRFDVDGIKIDRSFVLALVSEKGRKVFANLQ
LVAHSLELETIIEGVETQEQLDAMGDEYPFSVQGWFYSKSLNRGDFVEFVQRRNASKTVPVEAQ
>Mature_703_residues
SLFSMLSFNKYLPTVRKNELTKVSQYLVSAMHSIREGMVWLIPCLMISSFVLFIASMGELFSGGRPEWVLILYRANQVIA
ETFPYLMTATISYLLAMHWHLPRPPIALLSIIYLVVSSASVSAENNLPTFQIITALITPIYAIPLIAWLMRYPVLHLTRS
NSAGSIVRESLNLVLPAALTAMVVVGINLILFGPITRQIFASLMHFDYANDPYSFGLTFASLNSLLWFFGIHGYYALLPL
VELLQEASRLSESYFLIGETAPYPMNLSFMGTFVFIGGSGATFSLALAILLFGKQKNIRLLAIASLPIGLINVNEIFLFG
LPLILNPRLFFPFLLAPMVNVVVSLWAVESGWVAYPSVSVPFNSPIFLNAWIATSGDWNGLLLQLVNIVLGCLLYLPSVL
RLNEQYGQQTIRIPSLDTMYTRRQEEAAHLQDDPIALAQKREREQLKVEQQLQMMSSKEFCLEYQPQVCHRTGQVIGCEA
LIRAKDQQDNILSPATFLPSLAKAGLMKEMDLWVVKQATSDVRKLTNVGVYVPVSINLTAETLMDLTVMAQIEEIIRSVA
GLIHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFGTGYSSLSYLHRFDVDGIKIDRSFVLALVSEKGRKVFANLQL
VAHSLELETIIEGVETQEQLDAMGDEYPFSVQGWFYSKSLNRGDFVEFVQRRNASKTVPVEAQ

Specific function: Unknown

COG id: COG1455

COG function: function code G; Phosphotransferase system cellobiose-specific component IIC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=33.4661354581673, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=32.3651452282158, Blast_Score=129, Evalue=9e-31,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=30.9803921568627, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787541, Length=232, Percent_Identity=29.3103448275862, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=32.5, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081921, Length=235, Percent_Identity=30.2127659574468, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=31.404958677686, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI226510982, Length=275, Percent_Identity=27.6363636363636, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788032, Length=274, Percent_Identity=29.9270072992701, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=28.75, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=27.0161290322581, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI87082096, Length=285, Percent_Identity=24.5614035087719, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=26.2931034482759, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87082280, Length=147, Percent_Identity=32.6530612244898, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 78998; Mature: 78867

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS51105 PTS_EIIC_TYPE_3 ; PS50883 EAL ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFSMLSFNKYLPTVRKNELTKVSQYLVSAMHSIREGMVWLIPCLMISSFVLFIASMGE
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSGGRPEWVLILYRANQVIAETFPYLMTATISYLLAMHWHLPRPPIALLSIIYLVVSSA
HHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
SVSAENNLPTFQIITALITPIYAIPLIAWLMRYPVLHLTRSNSAGSIVRESLNLVLPAAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHH
TAMVVVGINLILFGPITRQIFASLMHFDYANDPYSFGLTFASLNSLLWFFGIHGYYALLP
HHHHHHHHHHHEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVELLQEASRLSESYFLIGETAPYPMNLSFMGTFVFIGGSGATFSLALAILLFGKQKNIR
HHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCEE
LLAIASLPIGLINVNEIFLFGLPLILNPRLFFPFLLAPMVNVVVSLWAVESGWVAYPSVS
EEEEECCCEEEEEHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEE
VPFNSPIFLNAWIATSGDWNGLLLQLVNIVLGCLLYLPSVLRLNEQYGQQTIRIPSLDTM
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHH
YTRRQEEAAHLQDDPIALAQKREREQLKVEQQLQMMSSKEFCLEYQPQVCHRTGQVIGCE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCEEEHH
ALIRAKDQQDNILSPATFLPSLAKAGLMKEMDLWVVKQATSDVRKLTNVGVYVPVSINLT
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCH
AETLMDLTVMAQIEEIIRSVAGLIHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFG
HHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
TGYSSLSYLHRFDVDGIKIDRSFVLALVSEKGRKVFANLQLVAHSLELETIIEGVETQEQ
CCHHHHHHHHHCCCCCEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LDAMGDEYPFSVQGWFYSKSLNRGDFVEFVQRRNASKTVPVEAQ
HHHCCCCCCCEEECEEEECCCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SLFSMLSFNKYLPTVRKNELTKVSQYLVSAMHSIREGMVWLIPCLMISSFVLFIASMGE
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSGGRPEWVLILYRANQVIAETFPYLMTATISYLLAMHWHLPRPPIALLSIIYLVVSSA
HHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
SVSAENNLPTFQIITALITPIYAIPLIAWLMRYPVLHLTRSNSAGSIVRESLNLVLPAAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHH
TAMVVVGINLILFGPITRQIFASLMHFDYANDPYSFGLTFASLNSLLWFFGIHGYYALLP
HHHHHHHHHHHEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVELLQEASRLSESYFLIGETAPYPMNLSFMGTFVFIGGSGATFSLALAILLFGKQKNIR
HHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCEE
LLAIASLPIGLINVNEIFLFGLPLILNPRLFFPFLLAPMVNVVVSLWAVESGWVAYPSVS
EEEEECCCEEEEEHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEE
VPFNSPIFLNAWIATSGDWNGLLLQLVNIVLGCLLYLPSVLRLNEQYGQQTIRIPSLDTM
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHH
YTRRQEEAAHLQDDPIALAQKREREQLKVEQQLQMMSSKEFCLEYQPQVCHRTGQVIGCE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCEEEHH
ALIRAKDQQDNILSPATFLPSLAKAGLMKEMDLWVVKQATSDVRKLTNVGVYVPVSINLT
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCH
AETLMDLTVMAQIEEIIRSVAGLIHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFG
HHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
TGYSSLSYLHRFDVDGIKIDRSFVLALVSEKGRKVFANLQLVAHSLELETIIEGVETQEQ
CCHHHHHHHHHCCCCCEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LDAMGDEYPFSVQGWFYSKSLNRGDFVEFVQRRNASKTVPVEAQ
HHHCCCCCCCEEECEEEECCCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]