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The map label for this gene is clpS

Identifier: 227081316

GI number: 227081316

Start: 1170108

End: 1170428

Strand: Direct

Name: clpS

Synonym: VCM66_1099

Alternate gene names: 227081316

Gene position: 1170108-1170428 (Clockwise)

Preceding gene: 227081314

Following gene: 227081317

Centisome position: 40.45

GC content: 42.37

Gene sequence:

>321_bases
ATGAGTAAAAACTTTGAATGGATCTCTCCAGACTTTGATTTGCTGGAGAAAGAAAAGACGGCGGTTAAGCCACCATCTAT
GTATCACGTGGTGTTAAACAACGATGATTACACACCGATGGACTTTGTAATTGAGATTCTTGAGCGCTTTTTCTCTATGG
ATATAGAGAGAGCGACGCAAGTGATGCTCAAAGTGCATTACGAAGGAAAAGCAATATGTGGCACGTTTACTGCAGAAGTT
GCAGAGACGAAAGTCGCTCAAGTAACGATGTACTCAAGGGAAAATGAGCACCCACTTTTGTGCACGATGGAGCAAGCTTA
A

Upstream 100 bases:

>100_bases
ATTCATTAAAGTGCGGATGCCGTCAGTGAGTTTAAACGGCTAGTTTTACAGCACTTTATAGTTGAATTCTCTGTAAGAAG
CCCTCAAATATTGAAGTGTC

Downstream 100 bases:

>100_bases
ACTTGCCGGGCAATGTGGTTGTTCCTTAAGGAGGCCTTATGCTTAACAAAGAATTAGAGTCGAGTCTAAACGGCGCGTTC
GCTCGGGCACGAGACAAAAG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSKNFEWISPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEV
AETKVAQVTMYSRENEHPLLCTMEQA

Sequences:

>Translated_106_residues
MSKNFEWISPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEV
AETKVAQVTMYSRENEHPLLCTMEQA
>Mature_105_residues
SKNFEWISPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEVA
ETKVAQVTMYSRENEHPLLCTMEQA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=108, Percent_Identity=68.5185185185185, Blast_Score=157, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_VIBC3 (A5F294)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F294
- SMR:   A5F294
- STRING:   A5F294
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0713
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   LMNDDYT
- ProtClustDB:   PRK00033
- BioCyc:   VCHO345073:VC0395_A0713-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12314; Mature: 12183

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNFEWISPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQ
CCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHH
VMLKVHYEGKAICGTFTAEVAETKVAQVTMYSRENEHPLLCTMEQA
HHEEEECCCCEEEHHHHHHHHHHHHHEEEEECCCCCCCEEEEECCC
>Mature Secondary Structure 
SKNFEWISPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQ
CCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHH
VMLKVHYEGKAICGTFTAEVAETKVAQVTMYSRENEHPLLCTMEQA
HHEEEECCCCEEEHHHHHHHHHHHHHEEEEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA