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The map label for this gene is cph2 [H]

Identifier: 227081202

GI number: 227081202

Start: 1053345

End: 1054319

Strand: Reverse

Name: cph2 [H]

Synonym: VCM66_0984

Alternate gene names: 227081202

Gene position: 1054319-1053345 (Counterclockwise)

Preceding gene: 227081203

Following gene: 227081196

Centisome position: 36.45

GC content: 47.59

Gene sequence:

>975_bases
GTGACTTCTATTTTTTCCTCGACGATTATTGCCAATCCTGAAATTCTGCAGTTTATTTTTCAATCGCTGCCTGAACCCAC
TTTTCTCATCAATAAGAAAGGGGTGTATATCGAAGCATGGGGAGGTACGGACAGTGAACGCCATCACAACCCCTCTTATC
TGGTCGGTTTAAACCAGTATGATGTGTTACCGGCAGCACAGGCTGCTTGGTTTACTGACGTCATCCAACAAGCGATCGAG
CAGGGCTGTGCCAAAGAGTTGGAATATGAAATTGATCCAACCCAGTTGCCCTGTTTTGACAATGTCCCTGGGCCAAGCCA
AAAGCAGTATTTCTCCGCATTAGTCATCCCTCTTCCCAACACAGACATGATGTTGTGGACCGTGCGTAACATCTCAGACT
ACAAGCACACGGTTGAAAAACTCGCGCAGCATCAGTTGGAACTTGAGCACCTGACTCATATGGATCATCTGACCCAAGTG
TACAACCGTTACGCAATGGATTCGTTGCTGCCGCAAGCACTGGACATCGCCCGACTCGATCGGGTCAGCAGCGCATTATT
GATGATCGATATTGACTGTTTCAAAGAGTACAACGACGGATATGGCCATATTCAAGGCGATGATGTCCTGCGCAAGGTCA
GCCAAACGCTGCGTCAATGGAAATCGAATCTCGATCTCTGCTTTCGCTACGGCGGGGATGAATTTTTGATTTTTATGACC
AGAGTCGATGCAAAGCAGTGCCAGCAACGAGCCGAAAAACTGATGGCGATGATTCATGAGCTGAACATCCCGCACCTGAG
TTCTCGAGTGGCGGATCATGTGACGATTACCGTAGGCATTCGCCACTGTGATCAAATAGAGAAAGAAATGACCGCGGAAA
AGCTTGTGTTAGTCGCCGATAAAGCGCTGTTTCATGCCAAACATGAGCAACGTGGCACCATTCATATGTTTAGTAGTACC
ACTTGGCATGAATAG

Upstream 100 bases:

>100_bases
TGAGCTTTTGAGATTGAATGTGACGGCCTACCCGTATCCGTTCTGAGTAAGATCATCTATAAATAGAGTAATAAGCGATC
ACTCATTAGGAATCAGGTCG

Downstream 100 bases:

>100_bases
CCTTATTACTCTTCTTATTCCCAGCGCTGCGCGGCTTGATGATCACTGTCGCGTGAATCAATCCAGCGACTCGCTTCGGT
CGTCAGCTCTTTTTTCCAAA

Product: GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTSIFSSTIIANPEILQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSYLVGLNQYDVLPAAQAAWFTDVIQQAIE
QGCAKELEYEIDPTQLPCFDNVPGPSQKQYFSALVIPLPNTDMMLWTVRNISDYKHTVEKLAQHQLELEHLTHMDHLTQV
YNRYAMDSLLPQALDIARLDRVSSALLMIDIDCFKEYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMT
RVDAKQCQQRAEKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQRGTIHMFSST
TWHE

Sequences:

>Translated_324_residues
MTSIFSSTIIANPEILQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSYLVGLNQYDVLPAAQAAWFTDVIQQAIE
QGCAKELEYEIDPTQLPCFDNVPGPSQKQYFSALVIPLPNTDMMLWTVRNISDYKHTVEKLAQHQLELEHLTHMDHLTQV
YNRYAMDSLLPQALDIARLDRVSSALLMIDIDCFKEYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMT
RVDAKQCQQRAEKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQRGTIHMFSST
TWHE
>Mature_323_residues
TSIFSSTIIANPEILQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSYLVGLNQYDVLPAAQAAWFTDVIQQAIEQ
GCAKELEYEIDPTQLPCFDNVPGPSQKQYFSALVIPLPNTDMMLWTVRNISDYKHTVEKLAQHQLELEHLTHMDHLTQVY
NRYAMDSLLPQALDIARLDRVSSALLMIDIDCFKEYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMTR
VDAKQCQQRAEKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQRGTIHMFSSTT
WHE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=31.2138728323699, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=196, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.5842696629214, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=29.6703296703297, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=28.1437125748503, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=27.5, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=29.0123456790123, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=32.0512820512821, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37233; Mature: 37102

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIFSSTIIANPEILQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSYLVGLNQY
CCCCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCC
DVLPAAQAAWFTDVIQQAIEQGCAKELEYEIDPTQLPCFDNVPGPSQKQYFSALVIPLPN
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCC
TDMMLWTVRNISDYKHTVEKLAQHQLELEHLTHMDHLTQVYNRYAMDSLLPQALDIARLD
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVSSALLMIDIDCFKEYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMT
HHHHEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEE
RVDAKQCQQRAEKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVAD
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
KALFHAKHEQRGTIHMFSSTTWHE
HHHHHHHHCCCCEEEEECCCCCCC
>Mature Secondary Structure 
TSIFSSTIIANPEILQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSYLVGLNQY
CCCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCC
DVLPAAQAAWFTDVIQQAIEQGCAKELEYEIDPTQLPCFDNVPGPSQKQYFSALVIPLPN
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCC
TDMMLWTVRNISDYKHTVEKLAQHQLELEHLTHMDHLTQVYNRYAMDSLLPQALDIARLD
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVSSALLMIDIDCFKEYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMT
HHHHEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEE
RVDAKQCQQRAEKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVAD
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
KALFHAKHEQRGTIHMFSSTTWHE
HHHHHHHHCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]