Click here to switch to the map view.

The map label for this gene is ybhK [C]

Identifier: 227081196

GI number: 227081196

Start: 1049387

End: 1050277

Strand: Reverse

Name: ybhK [C]

Synonym: VCM66_0978

Alternate gene names: 227081196

Gene position: 1050277-1049387 (Counterclockwise)

Preceding gene: 227081202

Following gene: 227081193

Centisome position: 36.31

GC content: 51.18

Gene sequence:

>891_bases
ATGTCTCTATACGAAAACAAAAAAGTGGTTGCGATTGGCGGCGGCCACGGTCTTGGGCGAATGCTGGCAGCGCTCAAAGT
GTTTGGTTCCAATGCCACAGGCATAGTCACCACCACAGACAACGGCGGCTCAACAGGACGCATTCGTCACTGCCAAGGTG
GGATTGCTTGGGGAGATACCCGTAACTGCATCAACCAGTTGATTACCGAGCCGTCGATCAGTTCAATGATGTTTGAATAC
CGCTTTAAAGGCGCAGGGGAGCTCAACGGCCACAACTTGGGCAACCTAATGCTCACCGCATTAGATAACCTTTCGGTGCG
CCCATTGGATGCGATCAATCTTATTCGCAACATGCTCAAAGTCGATGTCAATATCCTACCGATGTCTGAACATCCATCCG
ATCTGGCAGCCCTCGCTATGGATGGCAAATGGGTCACCGGTGAAACCAGCGTCGATGAGATGACTCAAGATTTGCGAAGA
CTTGACCTTGCGCCTGAAGTCCCGGCCACCAAAGAAGCGGTAACCGCCATTCAAGACGCAGACTGCGTGATTCTGGGCCC
CGGAAGCTTTTTAACCAGCGTCATGCCTCCTCTTCTGCTGCCAGAATTGGGCAAGGCGATTGCTCGTAATCAAACTGCGA
AAGTGATTTTTGTCGAGAACCTATCGCCAGAATATGGACCTGCAGGACGAATGAGCTTAGAGCAAAAATTGGAATGGTGT
GAACGCGCCTGCCAAGGGCGCAAAATTGATGTGGTATTGGGCCATCACCCTCATCCAGAGTTAGAACAGCGTTGGAATTT
TGTTACCCGAGATTTGGCTTCCGCCAACCGCGACTGGCGTCATGATCGGCAGAAGCTGAGACAAGCTATCGAAGAGCAGT
TAATGAACTAA

Upstream 100 bases:

>100_bases
GAAAAAAATGGTTACCTTGCAGAAATTAGCCCTAAATGGGTACTCATTATGAACCAAGTTAGCTAAATTGCTGCGAGTTA
TGAAAAAATAAGAAAAACCT

Downstream 100 bases:

>100_bases
ATCGGAGTAGCATTGATGCGTCTGCTTCAGTAACTCAAGCATATGTTCAACCTCTAGCGAGATGTCCATCATCTCGCCAG
ATTTGGCGCGACTATCTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSLYENKKVVAIGGGHGLGRMLAALKVFGSNATGIVTTTDNGGSTGRIRHCQGGIAWGDTRNCINQLITEPSISSMMFEY
RFKGAGELNGHNLGNLMLTALDNLSVRPLDAINLIRNMLKVDVNILPMSEHPSDLAALAMDGKWVTGETSVDEMTQDLRR
LDLAPEVPATKEAVTAIQDADCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENLSPEYGPAGRMSLEQKLEWC
ERACQGRKIDVVLGHHPHPELEQRWNFVTRDLASANRDWRHDRQKLRQAIEEQLMN

Sequences:

>Translated_296_residues
MSLYENKKVVAIGGGHGLGRMLAALKVFGSNATGIVTTTDNGGSTGRIRHCQGGIAWGDTRNCINQLITEPSISSMMFEY
RFKGAGELNGHNLGNLMLTALDNLSVRPLDAINLIRNMLKVDVNILPMSEHPSDLAALAMDGKWVTGETSVDEMTQDLRR
LDLAPEVPATKEAVTAIQDADCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENLSPEYGPAGRMSLEQKLEWC
ERACQGRKIDVVLGHHPHPELEQRWNFVTRDLASANRDWRHDRQKLRQAIEEQLMN
>Mature_295_residues
SLYENKKVVAIGGGHGLGRMLAALKVFGSNATGIVTTTDNGGSTGRIRHCQGGIAWGDTRNCINQLITEPSISSMMFEYR
FKGAGELNGHNLGNLMLTALDNLSVRPLDAINLIRNMLKVDVNILPMSEHPSDLAALAMDGKWVTGETSVDEMTQDLRRL
DLAPEVPATKEAVTAIQDADCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENLSPEYGPAGRMSLEQKLEWCE
RACQGRKIDVVLGHHPHPELEQRWNFVTRDLASANRDWRHDRQKLRQAIEEQLMN

Specific function: Unknown

COG id: COG0391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0052 family

Homologues:

Organism=Escherichia coli, GI1786997, Length=295, Percent_Identity=54.5762711864407, Blast_Score=295, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1023_VIBCH (Q9KT82)

Other databases:

- EMBL:   AE003852
- PIR:   E82250
- RefSeq:   NP_230668.1
- ProteinModelPortal:   Q9KT82
- SMR:   Q9KT82
- GeneID:   2614293
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC1023
- TIGR:   VC_1023
- HOGENOM:   HBG321904
- OMA:   FEYRFSG
- ProtClustDB:   CLSK2749703
- InterPro:   IPR002882
- InterPro:   IPR010119
- TIGRFAMs:   TIGR01826

Pfam domain/function: PF01933 UPF0052

EC number: NA

Molecular weight: Translated: 32574; Mature: 32443

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYENKKVVAIGGGHGLGRMLAALKVFGSNATGIVTTTDNGGSTGRIRHCQGGIAWGDT
CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCCCCHH
RNCINQLITEPSISSMMFEYRFKGAGELNGHNLGNLMLTALDNLSVRPLDAINLIRNMLK
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VDVNILPMSEHPSDLAALAMDGKWVTGETSVDEMTQDLRRLDLAPEVPATKEAVTAIQDA
HCCEEEECCCCCCHHEEEEECCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
DCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENLSPEYGPAGRMSLEQKLEWC
CEEEECCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
ERACQGRKIDVVLGHHPHPELEQRWNFVTRDLASANRDWRHDRQKLRQAIEEQLMN
HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLYENKKVVAIGGGHGLGRMLAALKVFGSNATGIVTTTDNGGSTGRIRHCQGGIAWGDT
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCCCCHH
RNCINQLITEPSISSMMFEYRFKGAGELNGHNLGNLMLTALDNLSVRPLDAINLIRNMLK
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VDVNILPMSEHPSDLAALAMDGKWVTGETSVDEMTQDLRRLDLAPEVPATKEAVTAIQDA
HCCEEEECCCCCCHHEEEEECCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
DCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENLSPEYGPAGRMSLEQKLEWC
CEEEECCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
ERACQGRKIDVVLGHHPHPELEQRWNFVTRDLASANRDWRHDRQKLRQAIEEQLMN
HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301