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The map label for this gene is ybbJ [H]

Identifier: 227081149

GI number: 227081149

Start: 997791

End: 998360

Strand: Reverse

Name: ybbJ [H]

Synonym: VCM66_0931

Alternate gene names: 227081149

Gene position: 998360-997791 (Counterclockwise)

Preceding gene: 227081150

Following gene: 227081143

Centisome position: 34.52

GC content: 48.25

Gene sequence:

>570_bases
TTGGTCAAGCAGAGAATGGTAAGATCATCATGCTGCCACTTGAAGCAACAGGCCTCATGGGTTCTGTCGCTGGAATTGCA
GAAATGTTTAAATCATCACAAACCACTAAGTAGGTGCCCCGTGGTAGAGCTACTCTCACAATTGAATTTCTGGCATTGGT
TGGCCTTGGGCCTACTTCTATTAGCCGCTGAGCTACTCGGCACTGCAGGTTATTTTTTGTGGCTTGGCCTATCAGCACTA
TTAGTTGGGGTATTGCTGGCCGTAATGCCTCTTGGTTGGCAACTGCAGTGGCTGGCTTTTGCGAGTTTTTCTCTGGTCAC
GACTTGGCTTTGGTGGCGACGTCAATTTAGCCGAGATAAAAAGCAAGATACAGAACGCGACCTTAACCAGAAAGAAAAAC
AGTTACTCGGACGTATTATTCCGATAACTCAAGATACCCCAGCAGGAGAGTTTCAAGTAACACTGGGTGATACGGCTTGG
ACAGCGCGCTGCGATCAGCAGCTTGCGGCTGGGAGCCGTGTTTCTGTCGTTGCTGTGGATGGGATTATCTTAGTCGTCCA
ACCTATCTAA

Upstream 100 bases:

>100_bases
GCCAAGGCAACCACTATGGTTTCAGAAGCCATCGCTAAAGGTGATATGCAAGCGGTCAATTACTTTATTGCTCAAGGCTA
TACCGAAGCGCTGAAAGCTA

Downstream 100 bases:

>100_bases
AAGTCTATCATTCTGTAGGCAACTTCAAGTCGGAACTAAGATCCTACGGGGTCTTAGTTTTATTGTTTGAACAACAATGT
CCCTTCAACTGTTCTATGAT

Product: putative Inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MVKQRMVRSSCCHLKQQASWVLSLELQKCLNHHKPLSRCPVVELLSQLNFWHWLALGLLLLAAELLGTAGYFLWLGLSAL
LVGVLLAVMPLGWQLQWLAFASFSLVTTWLWWRRQFSRDKKQDTERDLNQKEKQLLGRIIPITQDTPAGEFQVTLGDTAW
TARCDQQLAAGSRVSVVAVDGIILVVQPI

Sequences:

>Translated_189_residues
MVKQRMVRSSCCHLKQQASWVLSLELQKCLNHHKPLSRCPVVELLSQLNFWHWLALGLLLLAAELLGTAGYFLWLGLSAL
LVGVLLAVMPLGWQLQWLAFASFSLVTTWLWWRRQFSRDKKQDTERDLNQKEKQLLGRIIPITQDTPAGEFQVTLGDTAW
TARCDQQLAAGSRVSVVAVDGIILVVQPI
>Mature_189_residues
MVKQRMVRSSCCHLKQQASWVLSLELQKCLNHHKPLSRCPVVELLSQLNFWHWLALGLLLLAAELLGTAGYFLWLGLSAL
LVGVLLAVMPLGWQLQWLAFASFSLVTTWLWWRRQFSRDKKQDTERDLNQKEKQLLGRIIPITQDTPAGEFQVTLGDTAW
TARCDQQLAAGSRVSVVAVDGIILVVQPI

Specific function: Unknown

COG id: COG1585

COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0826 [H]

Homologues:

Organism=Escherichia coli, GI145693099, Length=127, Percent_Identity=34.6456692913386, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR002810 [H]

Pfam domain/function: PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 21401; Mature: 21401

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKQRMVRSSCCHLKQQASWVLSLELQKCLNHHKPLSRCPVVELLSQLNFWHWLALGLLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHH
LAAELLGTAGYFLWLGLSALLVGVLLAVMPLGWQLQWLAFASFSLVTTWLWWRRQFSRDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQDTERDLNQKEKQLLGRIIPITQDTPAGEFQVTLGDTAWTARCDQQLAAGSRVSVVAVD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEC
GIILVVQPI
CEEEEEECC
>Mature Secondary Structure
MVKQRMVRSSCCHLKQQASWVLSLELQKCLNHHKPLSRCPVVELLSQLNFWHWLALGLLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHH
LAAELLGTAGYFLWLGLSALLVGVLLAVMPLGWQLQWLAFASFSLVTTWLWWRRQFSRDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQDTERDLNQKEKQLLGRIIPITQDTPAGEFQVTLGDTAWTARCDQQLAAGSRVSVVAVD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEC
GIILVVQPI
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]