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The map label for this gene is xseB

Identifier: 227081067

GI number: 227081067

Start: 907801

End: 908043

Strand: Reverse

Name: xseB

Synonym: VCM66_0848

Alternate gene names: 227081067

Gene position: 908043-907801 (Counterclockwise)

Preceding gene: 227081073

Following gene: 227081066

Centisome position: 31.39

GC content: 51.85

Gene sequence:

>243_bases
ATGGCGAGCAAGAAACCGGAAAACATGTCCTTCGAGTCAACCATCGAAGAGCTGGAACAGTTGGTCGAACAGCTAGAAAG
TGGCGATCTGGCACTGGACGAAGCACTGCGCAAATTCGAGCGTGGCATCTCTTTAGCCAGAGCTGGCCAGCTCAAACTAG
ACGATGCTGAGCAGCGTGTGCGGATTTTGCTCAGTAACAGTGATGATGCCCCGCTCAGCGATTTTAGCGATGTAGCAGAG
TAA

Upstream 100 bases:

>100_bases
GTAAAAAAGCCTTCTATTTCTGACAAAATCGCTTGGTTAAATTTGACCAGCCAAGCCCCCTGAGGTAACTTTCGTGCATC
TTAAGTAAGGCATAAAAAAT

Downstream 100 bases:

>100_bases
CTCGCTCCACAGCCAGAACAACCGACAAAGATGAGTGTCCTATGATTGAGGCGTTATCCTCATACCAACAGCGAAATAAC
CAGCAACTGGATCAGTGGCT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MASKKPENMSFESTIEELEQLVEQLESGDLALDEALRKFERGISLARAGQLKLDDAEQRVRILLSNSDDAPLSDFSDVAE

Sequences:

>Translated_80_residues
MASKKPENMSFESTIEELEQLVEQLESGDLALDEALRKFERGISLARAGQLKLDDAEQRVRILLSNSDDAPLSDFSDVAE
>Mature_79_residues
ASKKPENMSFESTIEELEQLVEQLESGDLALDEALRKFERGISLARAGQLKLDDAEQRVRILLSNSDDAPLSDFSDVAE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=76, Percent_Identity=57.8947368421053, Blast_Score=86, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_VIBC3 (A5F333)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F333
- SMR:   A5F333
- STRING:   A5F333
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0414
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   CSKKLNE
- ProtClustDB:   PRK00977
- BioCyc:   VCHO345073:VC0395_A0414-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8911; Mature: 8780

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKKPENMSFESTIEELEQLVEQLESGDLALDEALRKFERGISLARAGQLKLDDAEQRV
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RILLSNSDDAPLSDFSDVAE
HHHHCCCCCCCCCHHHHHCC
>Mature Secondary Structure 
ASKKPENMSFESTIEELEQLVEQLESGDLALDEALRKFERGISLARAGQLKLDDAEQRV
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RILLSNSDDAPLSDFSDVAE
HHHHCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA