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The map label for this gene is ppdD [C]

Identifier: 227081033

GI number: 227081033

Start: 881178

End: 881621

Strand: Reverse

Name: ppdD [C]

Synonym: VCM66_0814

Alternate gene names: 227081033

Gene position: 881621-881178 (Counterclockwise)

Preceding gene: 227081041

Following gene: 227081029

Centisome position: 30.48

GC content: 43.92

Gene sequence:

>444_bases
ATGGAAATGATTCGAAAAATTTTCTGCAAGCCAAGTGTGAGTCAGCAACAAGGTATGACATTGATCGAATTAATGATCGC
GGTAGTGATCGTGGGAGTGTTAGCGAGCATCGCTTATCCAGCCTATACCAACTATGTCAAAGAAGGTCATCGTAAACAGG
CGATGGCAGATATGGCCAAAATTCAGCTCTATTTAGAGGAAAAGTATCAGAATGGCTATACGGCGACAGGCATCGTCGAT
GCTCAAAAGGTATGTAATTCCTTTTGTAGCGTAGACAGTGATCGTTACAAGATTGTGGTCGAAACTGCAGCCACTAGTTA
TGCGATTACAGCCACTCCGCAATCTAGTAAAGGACAAAATAGTGATCAATGCGACGGTAGCGCCTACACCTCTCTCACCT
TGAATGAGAAAGGTGTGACATCACCGATTGGGTGCTGGAAATAA

Upstream 100 bases:

>100_bases
GCATTTCCCAAAATCCTTTGCAAACCGTGAGAGGATGATGAATCAACTTGCATAGATGCTAACAGCTATCAAAAATGGCG
TTGTTTTATAAAGAGAAGTA

Downstream 100 bases:

>100_bases
GAAAAGACCAGCAAGCTGGTCTTTTCGATAGTGACTCATTGAATCTTGATTAACTGGTTAAGTCATCAAAAAACTTCTTC
ACACCATTAAAGAAGCCTTC

Product: putative fimbrial assembly protein PilE

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein PilE; Fimbrial Protein Pilin; Type IV Pilin; Type IV Pilus Assembly Protein PilE; Fimbrial Assembly Protein PilE; Type 4 Fimbrial Biogenesis Protein PilE; Tfp Pilus Assembly Protein PilE; Pilus Assembly Protein; Type IV Pilus Biogenesis Protein; Type IV Pilin PilE; Type 4 Fimbrial Biogenesis Transmembrane Protein

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MEMIRKIFCKPSVSQQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMADMAKIQLYLEEKYQNGYTATGIVD
AQKVCNSFCSVDSDRYKIVVETAATSYAITATPQSSKGQNSDQCDGSAYTSLTLNEKGVTSPIGCWK

Sequences:

>Translated_147_residues
MEMIRKIFCKPSVSQQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMADMAKIQLYLEEKYQNGYTATGIVD
AQKVCNSFCSVDSDRYKIVVETAATSYAITATPQSSKGQNSDQCDGSAYTSLTLNEKGVTSPIGCWK
>Mature_147_residues
MEMIRKIFCKPSVSQQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMADMAKIQLYLEEKYQNGYTATGIVD
AQKVCNSFCSVDSDRYKIVVETAATSYAITATPQSSKGQNSDQCDGSAYTSLTLNEKGVTSPIGCWK

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16100; Mature: 16100

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMIRKIFCKPSVSQQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMADMAK
CHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQLYLEEKYQNGYTATGIVDAQKVCNSFCSVDSDRYKIVVETAATSYAITATPQSSKGQN
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCCC
SDQCDGSAYTSLTLNEKGVTSPIGCWK
CCCCCCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MEMIRKIFCKPSVSQQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMADMAK
CHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQLYLEEKYQNGYTATGIVDAQKVCNSFCSVDSDRYKIVVETAATSYAITATPQSSKGQN
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCCC
SDQCDGSAYTSLTLNEKGVTSPIGCWK
CCCCCCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA