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The map label for this gene is tcpD

Identifier: 227081010

GI number: 227081010

Start: 852307

End: 853143

Strand: Direct

Name: tcpD

Synonym: VCM66_0790

Alternate gene names: 227081010

Gene position: 852307-853143 (Clockwise)

Preceding gene: 227081009

Following gene: 227081011

Centisome position: 29.47

GC content: 30.35

Gene sequence:

>837_bases
TTGGTTAATGTGATTATGAAGATTAGCAGTTTGAAGAAGGGAAGCAATTTCAGTATTAATATAAAAAATATAAAGCTTGA
TAAAAAATTGTTAGTGGCAATTATTTTTTTAGTTTTATCAATACTGGGAGGTGGAGCCTATTTATACTATGAAAATGAGA
AAACGAAAAAGTTAGAGCAGGCAAGATTACAGAAAATTCAAAAAGAGAACTCTGACAAACAAACCTATTTGTCAGATTTT
AAATCGGCTTTTGAAGGTCTTGATTACCAAGCGCTAACTGGTTTTTATGATGTACTCAGATCTGATATCGATTTTTTCAG
GGTAAATAATTGGTTATTAGATGTAATGGACTGTAATGTTAACTGTAATTTAGCCTTTAAACGAGGAAGCTTTGACACCT
TTACTTATTTAGAAATGAATCGAAATGGAGCTGTTATAAAACCACAGTTCGACCAGAATAAGCTCCAGTTTGCAAATGTG
GATTATATATCTGGTTTTCGTTCTATTTATCTCAAAGATCTCACTGAGCAAGAGAGAGATAAGAGTGAAAATATCATTGA
ACAGTGCTCAACAAAACTTTCTGAACTGTATAATTTGCAGTTGTTAATGAAAGAACAGGTGAAATTTAAAATAAATCTTC
CTAGGAATGTAACTTCAATATCGGGTTATGACTGGGTAAAAAATAGTGACATTAAATTCGGTTCTATTGAAATTGAAAAT
ATGCCAGAGAAAAACTTGGGTCTGATGAAAAATATTATGAATAATAGTATGATGATTACGTCTATCTCTTTGCAAAATTC
AAGTTTTAAATCCAAGTTAAATTATTACTGCTATTAA

Upstream 100 bases:

>100_bases
CACGAAGGTTGGATGCACAACTGATTGAAGATGAAGTCAAAAATAATAAAGTGTTTATTATTGGATTCATTGCTATTGTA
ATAATTAGTATCGGCGTATT

Downstream 100 bases:

>100_bases
GGTGGGATTAGAGAAATGAATATCAAACTATCATTTATTTCAATTGCTTTTCTATCGTTAAGTTTTAATGTTGCTGCTAA
CGAATTTGAAAAATCTCAAG

Product: toxin co-regulated pilus biosynthesis protein D

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpD

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQARLQKIQKENSDKQTYLSDF
KSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNVNCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANV
DYISGFRSIYLKDLTEQERDKSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY

Sequences:

>Translated_278_residues
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQARLQKIQKENSDKQTYLSDF
KSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNVNCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANV
DYISGFRSIYLKDLTEQERDKSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY
>Mature_278_residues
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQARLQKIQKENSDKQTYLSDF
KSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNVNCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANV
DYISGFRSIYLKDLTEQERDKSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY

Specific function: Involved in TCP pilus biogenesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TCPD_VIBCH (P29491)

Other databases:

- EMBL:   X64098
- EMBL:   AE003852
- PIR:   D82275
- RefSeq:   NP_230481.1
- GeneID:   2614500
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC0833
- TIGR:   VC_0833
- HOGENOM:   HBG739731
- OMA:   RNNDATI
- ProtClustDB:   CLSK793810

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32277; Mature: 32277

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x25bfb4e8)-;

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQ
CCEEEEEEHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
ARLQKIQKENSDKQTYLSDFKSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNV
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCEEEEEEECCC
NCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANVDYISGFRSIYLKDLTEQERD
EEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
KSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
HHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECC
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY
CCCCHHHHHHHHHCCCEEEEEEEECCCCHHHCCCCCCH
>Mature Secondary Structure
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQ
CCEEEEEEHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
ARLQKIQKENSDKQTYLSDFKSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNV
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCEEEEEEECCC
NCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANVDYISGFRSIYLKDLTEQERD
EEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
KSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
HHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECC
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY
CCCCHHHHHHHHHCCCEEEEEEEECCCCHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8097178; 10952301