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The map label for this gene is tcpB [H]

Identifier: 227081006

GI number: 227081006

Start: 848655

End: 849947

Strand: Direct

Name: tcpB [H]

Synonym: VCM66_0786

Alternate gene names: 227081006

Gene position: 848655-849947 (Clockwise)

Preceding gene: 227081005

Following gene: 227081007

Centisome position: 29.34

GC content: 40.53

Gene sequence:

>1293_bases
ATGAGAAAATACCAACAAGGTGTCGGATTATTGGAGGCGATTTTGGCCTCTGCCGTATTAGGGATGGCATTGGTCGCTGC
TGGGAGTTATTACAAGCGGGAAGCTGAACTCATGATTAAATCCAGTAACGCATTTGATGTTATTGAGTTGTCATCTCAAA
TCCAGCGTTACGCCTCTTTAAGTAAAATTAATAATCGTACTAACCCAATACTCAAAGATAATAAGGCAAAAGAATTTAAA
GATGCGGATTTGAAATGGTTAAAGCTTGAAAACTGCCTCACAGCAGGTGATGTGCCGACAACGGGTAATAATAATGATCT
ACAAGATCAGTTTATTGCTTGTGATGCTGATTATAGGAAAGGTGATCTAAGCTATTTTGGGAGTCAGTTTGAATTCTCAA
CCTATGTACATCCTTCCAACCCGGAAATTCAACGACAAATAAAACAAGTCGTCAGCTATTTTCAATATCGAGGCATGGAA
AGAGCGTTTATTGGCGATGCTGCGGGTTATGTTATCAGTGAGGCCAAGAAAAAAGGATTTAGCGCACAAGACTATCGAAT
CGTACTAATAGAACCTGATCGTGTCGGGTATTTTGAGTCAAATGTTATTAGCTATGAAGAGTTTATAGAAAATCCATCCG
CTCGTGAAAATTTTCTTTTAAAAGCGACGAAAGATAGAACTCTGGCGTTGGCGGTCAGTCTTGCCCAAACCGGAGAAATA
GCAATGCAACGTGATGGTTCCGTTGCATTTTTAGAAGATACTGAGTTGTGTTGGGATACGGCGGCAGGTAGTGCAAAGTC
TTGTCTCTCGGTTCGGTACGATACCGTTGGAAATAAAACAGAACTGGATTTAAAACAGATAGATGTGGTCAGTGCGAAAG
GCCTATCATTTGAAAGTGATGGTAAAACAAAAACACCAGTGGTTTCTACTTATGAGACTTTTCAAGATGGCGGACGGGCT
AAAACCATTAACGCTATTGAATGCCCAACAGGTTTAAATAATCGTTTTGCTGCGGTGGTGAGTTCATTTTCAACTGCTGG
ACAGAATGCAAACTTTAGTTCAGAGAGTGCTAAGGATTCTCAAGGCACAACCCAAAAGGATGGTAGCAAAGGATCACATG
CGCTTCTATCCGGTATATCACTGAACTGGACATTAACGAATAAGGTATGGGATGTAACTGCCTCGATTGGTATCGAGTCC
GGTATATTGCCTACTTCAGGTATCGATTCTGGATCGTTATTACGAAACCCTAAATCATTGTCTTTTATAGCGTTTCAATG
GTGTGAAAATTAA

Upstream 100 bases:

>100_bases
GTAGCTTTTGGTAACAGTTAATCTACACCATTATCTTGATAATTTAATAATAATTTGCCCATGGAAATGGGCAAATTATT
AAGCTAAAAGTGATATCAAT

Downstream 100 bases:

>100_bases
TGAAAAAAAACTATTACATAGGTGCATGCATCGCGCTCATATTAAGCGGGCCAACCTTTGCACAAGGAGAGATGCACAAT
ACAAATGAGCAGATTGCAGA

Product: toxin co-regulated pilus biosynthesis protein B

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpB [H]

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MRKYQQGVGLLEAILASAVLGMALVAAGSYYKREAELMIKSSNAFDVIELSSQIQRYASLSKINNRTNPILKDNKAKEFK
DADLKWLKLENCLTAGDVPTTGNNNDLQDQFIACDADYRKGDLSYFGSQFEFSTYVHPSNPEIQRQIKQVVSYFQYRGME
RAFIGDAAGYVISEAKKKGFSAQDYRIVLIEPDRVGYFESNVISYEEFIENPSARENFLLKATKDRTLALAVSLAQTGEI
AMQRDGSVAFLEDTELCWDTAAGSAKSCLSVRYDTVGNKTELDLKQIDVVSAKGLSFESDGKTKTPVVSTYETFQDGGRA
KTINAIECPTGLNNRFAAVVSSFSTAGQNANFSSESAKDSQGTTQKDGSKGSHALLSGISLNWTLTNKVWDVTASIGIES
GILPTSGIDSGSLLRNPKSLSFIAFQWCEN

Sequences:

>Translated_430_residues
MRKYQQGVGLLEAILASAVLGMALVAAGSYYKREAELMIKSSNAFDVIELSSQIQRYASLSKINNRTNPILKDNKAKEFK
DADLKWLKLENCLTAGDVPTTGNNNDLQDQFIACDADYRKGDLSYFGSQFEFSTYVHPSNPEIQRQIKQVVSYFQYRGME
RAFIGDAAGYVISEAKKKGFSAQDYRIVLIEPDRVGYFESNVISYEEFIENPSARENFLLKATKDRTLALAVSLAQTGEI
AMQRDGSVAFLEDTELCWDTAAGSAKSCLSVRYDTVGNKTELDLKQIDVVSAKGLSFESDGKTKTPVVSTYETFQDGGRA
KTINAIECPTGLNNRFAAVVSSFSTAGQNANFSSESAKDSQGTTQKDGSKGSHALLSGISLNWTLTNKVWDVTASIGIES
GILPTSGIDSGSLLRNPKSLSFIAFQWCEN
>Mature_430_residues
MRKYQQGVGLLEAILASAVLGMALVAAGSYYKREAELMIKSSNAFDVIELSSQIQRYASLSKINNRTNPILKDNKAKEFK
DADLKWLKLENCLTAGDVPTTGNNNDLQDQFIACDADYRKGDLSYFGSQFEFSTYVHPSNPEIQRQIKQVVSYFQYRGME
RAFIGDAAGYVISEAKKKGFSAQDYRIVLIEPDRVGYFESNVISYEEFIENPSARENFLLKATKDRTLALAVSLAQTGEI
AMQRDGSVAFLEDTELCWDTAAGSAKSCLSVRYDTVGNKTELDLKQIDVVSAKGLSFESDGKTKTPVVSTYETFQDGGRA
KTINAIECPTGLNNRFAAVVSSFSTAGQNANFSSESAKDSQGTTQKDGSKGSHALLSGISLNWTLTNKVWDVTASIGIES
GILPTSGIDSGSLLRNPKSLSFIAFQWCEN

Specific function: Involved in TCP pilus biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47109; Mature: 47109

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYQQGVGLLEAILASAVLGMALVAAGSYYKREAELMIKSSNAFDVIELSSQIQRYASL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHH
SKINNRTNPILKDNKAKEFKDADLKWLKLENCLTAGDVPTTGNNNDLQDQFIACDADYRK
HHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
GDLSYFGSQFEFSTYVHPSNPEIQRQIKQVVSYFQYRGMERAFIGDAAGYVISEAKKKGF
CCHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCC
SAQDYRIVLIEPDRVGYFESNVISYEEFIENPSARENFLLKATKDRTLALAVSLAQTGEI
CCCCEEEEEECCCCCCCHHCCCCCHHHHHCCCCCCCCEEEEECCCCEEEEEEEHHCCCCE
AMQRDGSVAFLEDTELCWDTAAGSAKSCLSVRYDTVGNKTELDLKQIDVVSAKGLSFESD
EEECCCCEEEEECCHHHHHCCCCCHHHHHEEEECCCCCCCCCCHHHEEEEECCCCCCCCC
GKTKTPVVSTYETFQDGGRAKTINAIECPTGLNNRFAAVVSSFSTAGQNANFSSESAKDS
CCCCCCEEEEHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
QGTTQKDGSKGSHALLSGISLNWTLTNKVWDVTASIGIESGILPTSGIDSGSLLRNPKSL
CCCCCCCCCCCCHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCC
SFIAFQWCEN
EEEEEEECCC
>Mature Secondary Structure
MRKYQQGVGLLEAILASAVLGMALVAAGSYYKREAELMIKSSNAFDVIELSSQIQRYASL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHH
SKINNRTNPILKDNKAKEFKDADLKWLKLENCLTAGDVPTTGNNNDLQDQFIACDADYRK
HHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
GDLSYFGSQFEFSTYVHPSNPEIQRQIKQVVSYFQYRGMERAFIGDAAGYVISEAKKKGF
CCHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCC
SAQDYRIVLIEPDRVGYFESNVISYEEFIENPSARENFLLKATKDRTLALAVSLAQTGEI
CCCCEEEEEECCCCCCCHHCCCCCHHHHHCCCCCCCCEEEEECCCCEEEEEEEHHCCCCE
AMQRDGSVAFLEDTELCWDTAAGSAKSCLSVRYDTVGNKTELDLKQIDVVSAKGLSFESD
EEECCCCEEEEECCHHHHHCCCCCHHHHHEEEECCCCCCCCCCHHHEEEEECCCCCCCCC
GKTKTPVVSTYETFQDGGRAKTINAIECPTGLNNRFAAVVSSFSTAGQNANFSSESAKDS
CCCCCCEEEEHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
QGTTQKDGSKGSHALLSGISLNWTLTNKVWDVTASIGIESGILPTSGIDSGSLLRNPKSL
CCCCCCCCCCCCHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCC
SFIAFQWCEN
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8621096; 10952301; 2576015 [H]