BacMap

Definition	Vibrio cholerae M66-2 chromosome I, complete genome.
Accession	NC_012578
Length	2,892,523

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The map label for this gene is srmB [H]

Identifier: 227080841

GI number: 227080841

Start: 663035

End: 664306

Strand: Reverse

Name: srmB [H]

Synonym: VCM66_0618

Alternate gene names: 227080841

Gene position: 664306-663035 (Counterclockwise)

Preceding gene: 227080842

Following gene: 227080839

Centisome position: 22.97

GC content: 51.65

Gene sequence:

>1272_bases
GTGATTAAAACCTTTGCCGACCTCGAACTCGATCCAATTTTGCTTGAAGCGATCGAAGAAATGGGCTTTAGCCGCCCAAC
CCAAGTTCAGGCTGAAGCAATCCCGCAAGCACTGGATGGTCGCGATGTCTTAGCCTCAGCCCCAACAGGCACGGGTAAAA
CGGCGGCTTTCGTGATCCCAGCGCTGCAATATTTGCTCGATTTCCCACGCCGTAAAGCGGGTCCTGCGCGGATTTTGATC
CTCACTCCGACTCGTGAACTGGCGATGCAAGTAGCTGAACAAGCACAGGCGCTGGCCAAAAATACTCGTCTGAACATTTT
CACCATTACCGGTGGTGTTCAGTACCAAGAGCACGCCGATATTCTGGCCACGACTCAAGATATCGTGGTCGCCACACCAG
GACGTCTGCTGGAATACATTGACGCCGAGCGCTTTGATTGTCGTGCGATTGAGTGGCTGATCCTCGATGAAGCGGACCGC
ATGTTGGACATGGGCTTTGGCCCAACCGTTGATCGCCTTTCGACCGAGTGTCGCTGGCGTAAACAGACACTGCTCTTTTC
AGCAACCCTAGAAGGCCGCGGTGTGGAAGGCTTTACTGCCGATCTGTTAAAAGATCCCGCCCATGTCGATGCCGAGCCAC
CCCGTCGTGAGCGTAAGAAAATTTCGCAGTGGTACCACCGCGCCGATGATATGCCACACAAAGTGGAACTGCTGAAAAAG
ATCCTAACCGAGCAAGCTGAACGTTCTATCGTGTTTTTGAAAACTCGTGAGCGTCTCGCAGACCTGCGTGCTGAGCTGGA
GAAAGCCCAGATCCCTTGTGCTTGGATTCAAGGTGAAATGCCGCAAGATCGCCGTAACAATGCGATCAGCCGTTTCCGTG
AAGGCGATGTCAATATTCTGCTGGCTACCGATGTGGCGGCGCGTGGTATTGATGTGCCAGACATTAGCCATGTGATCAAC
TTTGACTTGCCACGCAGTGCTGACGTTTACCTACACCGTATTGGTCGCACCGGACGTGCAGGGAAAAAAGGTATTGCTAT
TTCACTGGTTGAAGCGCACGACCAGCCGATGATGGCGCGTGTTGAACGTTACATCAAAGAAGAAGTCAAAGAGCGCTTTA
TTGATGGTTTACGCCCTAAGCACAAAAAGCCTGTGTTTAAGAAAAAGAAAAAAGACATCAAGAAAACCGCAGACAAAGGC
GCGGTGAAAAAGAAAACCACCAGCAAGCCAAAAGCAAAAGCGACCAAGAAGAAAGCCGCGACCAAAGCCTAA

Upstream 100 bases:

>100_bases
GAAGATGTCGTAATTAAAGATGTGATCTAAAGCGTGATCCATCTATAATGTGCGCCCTGTTTTAAGACAGAGCCTTTCAA
CGCTTGTGGAGTAATTATTT

Downstream 100 bases:

>100_bases
GCGCAACCAAAGCCTAAGTAAGATAGGCAATCCAGTTACGAAAAAGCCGATGAATTTTCATCGGCTTTTTTATTTGGTTA
GAGCAACGCGCACTAAATTG

Product: ATP-dependent RNA helicase SrmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILI
LTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADR
MLDMGFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVIN
FDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKG
AVKKKTTSKPKAKATKKKAATKA

Sequences:

>Translated_423_residues
MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILI
LTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADR
MLDMGFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVIN
FDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKG
AVKKKTTSKPKAKATKKKAATKA
>Mature_423_residues
MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILI
LTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADR
MLDMGFGPTVDRLSTECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVIN
FDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKG
AVKKKTTSKPKAKATKKKAATKA

Specific function: RNA-dependent ATPase activity. Probably interacts with 23S ribosomal RNA [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI20149629, Length=374, Percent_Identity=38.2352941176471, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI45446747, Length=366, Percent_Identity=35.2459016393443, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI45446743, Length=366, Percent_Identity=35.2459016393443, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI41327776, Length=364, Percent_Identity=34.8901098901099, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI224593278, Length=378, Percent_Identity=35.7142857142857, Blast_Score=224, Evalue=1e-58,
Organism=Homo sapiens, GI31542656, Length=378, Percent_Identity=37.037037037037, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI4758138, Length=359, Percent_Identity=34.2618384401114, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI148613856, Length=350, Percent_Identity=35.4285714285714, Blast_Score=218, Evalue=8e-57,
Organism=Homo sapiens, GI38201710, Length=350, Percent_Identity=35.4285714285714, Blast_Score=218, Evalue=8e-57,
Organism=Homo sapiens, GI7661920, Length=369, Percent_Identity=34.6883468834688, Blast_Score=214, Evalue=1e-55,
Organism=Homo sapiens, GI262118318, Length=408, Percent_Identity=33.0882352941176, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI301171467, Length=372, Percent_Identity=34.6774193548387, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI41327771, Length=400, Percent_Identity=33, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI87196351, Length=372, Percent_Identity=34.6774193548387, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI301171475, Length=372, Percent_Identity=34.6774193548387, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI262231852, Length=425, Percent_Identity=32.9411764705882, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI13518015, Length=410, Percent_Identity=33.1707317073171, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI216548263, Length=408, Percent_Identity=33.0882352941176, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI41327773, Length=364, Percent_Identity=31.8681318681319, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=33.695652173913, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI222352149, Length=395, Percent_Identity=34.6835443037975, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI169881239, Length=370, Percent_Identity=35.1351351351351, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI13514809, Length=370, Percent_Identity=35.1351351351351, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI164419743, Length=357, Percent_Identity=34.1736694677871, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI51094101, Length=357, Percent_Identity=34.1736694677871, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI21071032, Length=360, Percent_Identity=31.6666666666667, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI55749865, Length=356, Percent_Identity=32.0224719101124, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI9506931, Length=402, Percent_Identity=31.8407960199005, Blast_Score=189, Evalue=5e-48,
Organism=Homo sapiens, GI8922886, Length=389, Percent_Identity=33.4190231362468, Blast_Score=188, Evalue=6e-48,
Organism=Homo sapiens, GI6005743, Length=389, Percent_Identity=33.6760925449871, Blast_Score=188, Evalue=8e-48,
Organism=Homo sapiens, GI38327634, Length=361, Percent_Identity=33.5180055401662, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI4758112, Length=352, Percent_Identity=32.1022727272727, Blast_Score=185, Evalue=6e-47,
Organism=Homo sapiens, GI18375623, Length=352, Percent_Identity=32.1022727272727, Blast_Score=185, Evalue=6e-47,
Organism=Homo sapiens, GI21040371, Length=352, Percent_Identity=31.5340909090909, Blast_Score=185, Evalue=8e-47,
Organism=Homo sapiens, GI13514831, Length=369, Percent_Identity=32.2493224932249, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI38569505, Length=381, Percent_Identity=34.6456692913386, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI38569503, Length=381, Percent_Identity=34.6456692913386, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI164419732, Length=395, Percent_Identity=33.4177215189873, Blast_Score=178, Evalue=7e-45,
Organism=Homo sapiens, GI188035877, Length=378, Percent_Identity=32.010582010582, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI50659095, Length=376, Percent_Identity=30.3191489361702, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI83700235, Length=374, Percent_Identity=32.8877005347594, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI62241022, Length=370, Percent_Identity=33.5135135135135, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI4503529, Length=374, Percent_Identity=31.8181818181818, Blast_Score=172, Evalue=6e-43,
Organism=Homo sapiens, GI13129006, Length=376, Percent_Identity=29.2553191489362, Blast_Score=171, Evalue=2e-42,
Organism=Homo sapiens, GI41327779, Length=363, Percent_Identity=34.1597796143251, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI256223453, Length=371, Percent_Identity=30.9973045822102, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI62241024, Length=348, Percent_Identity=33.0459770114943, Blast_Score=158, Evalue=9e-39,
Organism=Homo sapiens, GI17505907, Length=405, Percent_Identity=30.6172839506173, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI256773275, Length=421, Percent_Identity=31.5914489311164, Blast_Score=141, Evalue=9e-34,
Organism=Homo sapiens, GI9966805, Length=340, Percent_Identity=29.7058823529412, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI4826686, Length=386, Percent_Identity=27.4611398963731, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI154759257, Length=410, Percent_Identity=30.2439024390244, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI20336298, Length=219, Percent_Identity=36.5296803652968, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI1788930, Length=395, Percent_Identity=62.7848101265823, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI1787016, Length=381, Percent_Identity=39.1076115485564, Blast_Score=258, Evalue=7e-70,
Organism=Escherichia coli, GI87082221, Length=369, Percent_Identity=40.1084010840108, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1790214, Length=379, Percent_Identity=35.8839050131926, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1787605, Length=359, Percent_Identity=36.4902506963788, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI48994977, Length=373, Percent_Identity=24.9329758713137, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17555296, Length=371, Percent_Identity=36.9272237196765, Blast_Score=242, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI17552642, Length=374, Percent_Identity=36.6310160427808, Blast_Score=230, Evalue=9e-61,
Organism=Caenorhabditis elegans, GI86570094, Length=364, Percent_Identity=36.2637362637363, Blast_Score=222, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI115533224, Length=362, Percent_Identity=37.0165745856354, Blast_Score=221, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI71999646, Length=352, Percent_Identity=36.3636363636364, Blast_Score=219, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17510307, Length=393, Percent_Identity=33.587786259542, Blast_Score=219, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17510309, Length=389, Percent_Identity=33.9331619537275, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI71999644, Length=352, Percent_Identity=36.3636363636364, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI71995514, Length=389, Percent_Identity=33.9331619537275, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI71995724, Length=372, Percent_Identity=35.4838709677419, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17507121, Length=372, Percent_Identity=35.2150537634409, Blast_Score=215, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI17552114, Length=367, Percent_Identity=33.2425068119891, Blast_Score=210, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI32565321, Length=374, Percent_Identity=34.4919786096257, Blast_Score=207, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI71987143, Length=373, Percent_Identity=32.4396782841823, Blast_Score=207, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI71995718, Length=375, Percent_Identity=35.2, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17510559, Length=386, Percent_Identity=32.1243523316062, Blast_Score=206, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI17507881, Length=377, Percent_Identity=32.6259946949602, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17507877, Length=371, Percent_Identity=33.4231805929919, Blast_Score=194, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI17505370, Length=352, Percent_Identity=33.5227272727273, Blast_Score=194, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI17537549, Length=359, Percent_Identity=33.7047353760446, Blast_Score=193, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17507945, Length=361, Percent_Identity=34.6260387811634, Blast_Score=190, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI115532548, Length=393, Percent_Identity=33.3333333333333, Blast_Score=188, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI115532546, Length=383, Percent_Identity=33.420365535248, Blast_Score=187, Evalue=8e-48,
Organism=Caenorhabditis elegans, GI17507879, Length=388, Percent_Identity=31.701030927835, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17509811, Length=371, Percent_Identity=31.8059299191375, Blast_Score=183, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17507641, Length=382, Percent_Identity=33.7696335078534, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71982858, Length=353, Percent_Identity=32.5779036827195, Blast_Score=175, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17508543, Length=419, Percent_Identity=28.8782816229117, Blast_Score=169, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI32564046, Length=373, Percent_Identity=32.7077747989276, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI193208216, Length=381, Percent_Identity=30.1837270341207, Blast_Score=159, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI25148203, Length=416, Percent_Identity=26.9230769230769, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI193206561, Length=350, Percent_Identity=29.7142857142857, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17536099, Length=390, Percent_Identity=31.7948717948718, Blast_Score=155, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17536101, Length=393, Percent_Identity=31.5521628498728, Blast_Score=155, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17536103, Length=397, Percent_Identity=31.4861460957179, Blast_Score=154, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI17556951, Length=363, Percent_Identity=30.0275482093664, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71990816, Length=404, Percent_Identity=28.960396039604, Blast_Score=149, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI17553716, Length=374, Percent_Identity=27.0053475935829, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI71997889, Length=441, Percent_Identity=26.3038548752834, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI25148291, Length=387, Percent_Identity=25.0645994832041, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71982862, Length=189, Percent_Identity=34.9206349206349, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71987152, Length=106, Percent_Identity=39.622641509434, Blast_Score=94, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323021, Length=362, Percent_Identity=34.2541436464088, Blast_Score=236, Evalue=6e-63,
Organism=Saccharomyces cerevisiae, GI6321856, Length=397, Percent_Identity=35.0125944584383, Blast_Score=225, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6324217, Length=371, Percent_Identity=34.5013477088949, Blast_Score=223, Evalue=4e-59,
Organism=Saccharomyces cerevisiae, GI6325138, Length=387, Percent_Identity=35.4005167958656, Blast_Score=223, Evalue=5e-59,
Organism=Saccharomyces cerevisiae, GI6320041, Length=368, Percent_Identity=35.054347826087, Blast_Score=222, Evalue=8e-59,
Organism=Saccharomyces cerevisiae, GI6324778, Length=387, Percent_Identity=33.3333333333333, Blast_Score=213, Evalue=4e-56,
Organism=Saccharomyces cerevisiae, GI6321360, Length=354, Percent_Identity=35.5932203389831, Blast_Score=204, Evalue=3e-53,
Organism=Saccharomyces cerevisiae, GI6320224, Length=368, Percent_Identity=34.2391304347826, Blast_Score=202, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6322912, Length=372, Percent_Identity=34.9462365591398, Blast_Score=201, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6322323, Length=372, Percent_Identity=34.9462365591398, Blast_Score=201, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6320449, Length=392, Percent_Identity=33.1632653061224, Blast_Score=199, Evalue=5e-52,
Organism=Saccharomyces cerevisiae, GI6321963, Length=385, Percent_Identity=34.025974025974, Blast_Score=192, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6323947, Length=359, Percent_Identity=35.3760445682451, Blast_Score=189, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6322427, Length=369, Percent_Identity=31.9783197831978, Blast_Score=186, Evalue=7e-48,
Organism=Saccharomyces cerevisiae, GI6320119, Length=385, Percent_Identity=31.4285714285714, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6324620, Length=376, Percent_Identity=32.1808510638298, Blast_Score=173, Evalue=6e-44,
Organism=Saccharomyces cerevisiae, GI6319618, Length=406, Percent_Identity=29.5566502463054, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6319714, Length=376, Percent_Identity=28.1914893617021, Blast_Score=166, Evalue=8e-42,
Organism=Saccharomyces cerevisiae, GI6321267, Length=369, Percent_Identity=34.1463414634146, Blast_Score=163, Evalue=4e-41,
Organism=Saccharomyces cerevisiae, GI6320400, Length=384, Percent_Identity=31.25, Blast_Score=160, Evalue=4e-40,
Organism=Saccharomyces cerevisiae, GI6323306, Length=419, Percent_Identity=27.2076372315036, Blast_Score=160, Evalue=4e-40,
Organism=Saccharomyces cerevisiae, GI6321111, Length=366, Percent_Identity=28.4153005464481, Blast_Score=157, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6320173, Length=213, Percent_Identity=38.0281690140845, Blast_Score=142, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6324366, Length=364, Percent_Identity=27.4725274725275, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6322876, Length=180, Percent_Identity=26.1111111111111, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24662330, Length=368, Percent_Identity=36.1413043478261, Blast_Score=240, Evalue=1e-63,
Organism=Drosophila melanogaster, GI24585582, Length=372, Percent_Identity=37.0967741935484, Blast_Score=235, Evalue=4e-62,
Organism=Drosophila melanogaster, GI24584399, Length=353, Percent_Identity=35.9773371104816, Blast_Score=232, Evalue=4e-61,
Organism=Drosophila melanogaster, GI24642151, Length=354, Percent_Identity=37.0056497175141, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI21356161, Length=380, Percent_Identity=34.4736842105263, Blast_Score=225, Evalue=6e-59,
Organism=Drosophila melanogaster, GI17985987, Length=381, Percent_Identity=35.1706036745407, Blast_Score=221, Evalue=8e-58,
Organism=Drosophila melanogaster, GI24583281, Length=369, Percent_Identity=36.3143631436314, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI21355075, Length=367, Percent_Identity=35.6948228882834, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24583279, Length=369, Percent_Identity=36.3143631436314, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI28574962, Length=341, Percent_Identity=36.0703812316716, Blast_Score=216, Evalue=3e-56,
Organism=Drosophila melanogaster, GI24645031, Length=372, Percent_Identity=34.6774193548387, Blast_Score=212, Evalue=4e-55,
Organism=Drosophila melanogaster, GI24644483, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI24644487, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI45551833, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI24644485, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI281361218, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=9e-55,
Organism=Drosophila melanogaster, GI24644481, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=9e-55,
Organism=Drosophila melanogaster, GI24644479, Length=362, Percent_Identity=33.7016574585635, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI17977678, Length=436, Percent_Identity=30.5045871559633, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24584994, Length=378, Percent_Identity=32.5396825396825, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI28575014, Length=352, Percent_Identity=34.375, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI18857967, Length=361, Percent_Identity=33.2409972299169, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI17136814, Length=377, Percent_Identity=32.0954907161804, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24581954, Length=374, Percent_Identity=31.283422459893, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24581952, Length=374, Percent_Identity=31.283422459893, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24581956, Length=374, Percent_Identity=31.283422459893, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24582080, Length=369, Percent_Identity=33.6043360433604, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24582078, Length=369, Percent_Identity=33.6043360433604, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI17136248, Length=369, Percent_Identity=33.6043360433604, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24582075, Length=369, Percent_Identity=33.6043360433604, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28571808, Length=374, Percent_Identity=31.283422459893, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI28571809, Length=374, Percent_Identity=31.283422459893, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24642822, Length=379, Percent_Identity=31.3984168865435, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI281365720, Length=302, Percent_Identity=34.1059602649007, Blast_Score=172, Evalue=5e-43,
Organism=Drosophila melanogaster, GI24666101, Length=425, Percent_Identity=29.1764705882353, Blast_Score=169, Evalue=4e-42,
Organism=Drosophila melanogaster, GI24643725, Length=397, Percent_Identity=31.9899244332494, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI17647335, Length=359, Percent_Identity=31.7548746518106, Blast_Score=166, Evalue=3e-41,
Organism=Drosophila melanogaster, GI20130173, Length=444, Percent_Identity=29.0540540540541, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI21355559, Length=378, Percent_Identity=33.8624338624339, Blast_Score=157, Evalue=9e-39,
Organism=Drosophila melanogaster, GI18859659, Length=445, Percent_Identity=28.9887640449438, Blast_Score=144, Evalue=9e-35,
Organism=Drosophila melanogaster, GI28571338, Length=445, Percent_Identity=28.9887640449438, Blast_Score=144, Evalue=1e-34,
Organism=Drosophila melanogaster, GI17136666, Length=489, Percent_Identity=27.19836400818, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI19920478, Length=370, Percent_Identity=28.9189189189189, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24640164, Length=350, Percent_Identity=27.4285714285714, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24668515, Length=337, Percent_Identity=29.9703264094956, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 47624; Mature: 47624

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP
CCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHEECCCCCCCCHHHHHHH
ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD
HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCC
ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR
HHEECCCEEEECCHHHHHHHCCCCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHH
KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
HHHEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCEEE
LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR
EEECHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHH
VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
TKA
CCC
>Mature Secondary Structure
MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP
CCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHEECCCCCCCCHHHHHHH
ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD
HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCC
ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWR
HHEECCCEEEECCHHHHHHHCCCCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHH
KQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK
HHHEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNIL
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCEEE
LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR
EEECHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHH
VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
TKA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]