Click here to switch to the map view.

The map label for this gene is csrA [H]

Identifier: 227080731

GI number: 227080731

Start: 538036

End: 538233

Strand: Direct

Name: csrA [H]

Synonym: VCM66_0506

Alternate gene names: 227080731

Gene position: 538036-538233 (Clockwise)

Preceding gene: 227080730

Following gene: 227080732

Centisome position: 18.6

GC content: 47.47

Gene sequence:

>198_bases
ATGCTTATTTTGACTCGCCGTGTTGGCGAAACCCTGATGATCGGTGACGAAGTGACCGTGACAGTATTAGGTGTAAAAGG
TAACCAAGTCCGTATCGGTGTAAACGCACCGAAAGAAGTGTCTGTGCACCGTGAAGAAATCTACATGCGCATTCAAGCTG
AGAAAGGTAATGGTGGCGTTGCGTCTGGCAACTACTAA

Upstream 100 bases:

>100_bases
TTAGGTTAAACGGGCACCATTGAGAGTTTACGATGTCATAACTTTTGATGGATAATAGTGTGGTTGCAAGAAAATACAGA
GATTACTCAGGGAGCTAAGA

Downstream 100 bases:

>100_bases
TTATCGAAGAAAGGTCGGCCGTTAACGCCGACCTTTTTGTTTATCCCCGTGTTTTTATTTAGAAAGTGCAAATTCTCAGC
GCTTTGGTTAATTTGCCAAC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGGVASGNY

Sequences:

>Translated_65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGGVASGNY
>Mature_65_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGGVASGNY

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=94.7368421052632, Blast_Score=108, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 7055; Mature: 7055

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGGV
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCE
ASGNY
ECCCC
>Mature Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGNGGV
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCE
ASGNY
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA