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The map label for this gene is cycB

Identifier: 227080401

GI number: 227080401

Start: 166742

End: 167149

Strand: Reverse

Name: cycB

Synonym: VCM66_0167

Alternate gene names: NA

Gene position: 167149-166742 (Counterclockwise)

Preceding gene: 227080402

Following gene: 227080399

Centisome position: 5.78

GC content: 50.25

Gene sequence:

>408_bases
ATGGATATGTCTCGATCACTCTTAAGCGTACTGTTCGCTGCTCTAACATTTTCTACTGCAGCGTTTGCTCTAACTGAAGC
CGATAAAAATGCAATTGCTGAACGCATTAAGCCGGTAGGTGATGTGTATCTGGCGGGTAGCGAACCAGTACAAGCCGCTC
CTACAGGTCCTCGTGATGGCGCAACGGTTTACGGTACTTTTTGTACTGCCTGTCACTCAGCGGGGATCTCTGGTGCACCG
AAAACAGGCAATGCTGCCGATTGGGGACCGCGTATCGCCCAAGGTAAGGATGTGTTGAAAAACCACGCGCTAAACGGCTT
CAATGCCATGCCGCCAAAAGGCACCTGTATGGATTGTTCTGACGATGAAATCGTTGCTGCGATTGAGCATATGATCGCAG
GCCTGTAA

Upstream 100 bases:

>100_bases
AAAATTTACATTGATTTAACAGCAATTACCGCCCGTTAAATTGAAACACTCTAAAAATAATAGGTAAGCAGCACTTACCT
TCGGAATGTAAAGTGAGTTA

Downstream 100 bases:

>100_bases
TAAGCGGGCTTACCATTCCATCAATTGATAATAAAGAAGGGCTTGTTTTGACAAGCCCTTCTTTATTTACTTCTTAAACA
TCGCTCTTAAATTAGCGATA

Product: cytochrome c5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYLAGSEPVQAAPTGPRDGATVYGTFCTACHSAGISGAP
KTGNAADWGPRIAQGKDVLKNHALNGFNAMPPKGTCMDCSDDEIVAAIEHMIAGL

Sequences:

>Translated_135_residues
MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYLAGSEPVQAAPTGPRDGATVYGTFCTACHSAGISGAP
KTGNAADWGPRIAQGKDVLKNHALNGFNAMPPKGTCMDCSDDEIVAAIEHMIAGL
>Mature_135_residues
MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYLAGSEPVQAAPTGPRDGATVYGTFCTACHSAGISGAP
KTGNAADWGPRIAQGKDVLKNHALNGFNAMPPKGTCMDCSDDEIVAAIEHMIAGL

Specific function: It is unreactive with cytochrome c reductase or oxidase [H]

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR002323 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13913; Mature: 13913

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYLAGSEPVQAAPTGPRDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCC
ATVYGTFCTACHSAGISGAPKTGNAADWGPRIAQGKDVLKNHALNGFNAMPPKGTCMDCS
CEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DDEIVAAIEHMIAGL
CCHHHHHHHHHHHCC
>Mature Secondary Structure
MDMSRSLLSVLFAALTFSTAAFALTEADKNAIAERIKPVGDVYLAGSEPVQAAPTGPRDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCC
ATVYGTFCTACHSAGISGAPKTGNAADWGPRIAQGKDVLKNHALNGFNAMPPKGTCMDCS
CEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DDEIVAAIEHMIAGL
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2993632 [H]