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The map label for this gene is 227080399

Identifier: 227080399

GI number: 227080399

Start: 163918

End: 164514

Strand: Reverse

Name: 227080399

Synonym: VCM66_0165

Alternate gene names: NA

Gene position: 164514-163918 (Counterclockwise)

Preceding gene: 227080401

Following gene: 227080398

Centisome position: 5.69

GC content: 42.38

Gene sequence:

>597_bases
TTGCAGAGAAATGTGATGTCTGAAATAGTGTACGGCGATAAACAGCTCCAAATCCTTATCGCGGCTGAAAAACTGATTGC
AGAACAGGGCTTTCAAGGGCTCTCGATGCATAAAGTGGCGAAAGCAGCGAATATGGCAACCGGAACGATTTATCGTTACT
TCCGCGATAAAGATCATCTCTTGATTGAAGTGCGTTTGCACGTTAGTCAAAAAATCGCCGAAGCCGTACAAGCTAATCTT
AGAGATGACATGTCTTTGCAAGAACGCTTCCGTACTATGTGGCTGAATATTTGGACGTTGGCTGGCTCTTGTCGTGACAT
TATTAGTAATCGAGTGCAGTATGAGTCTTTACCAACAACAACTTGTTGCAATGTAAGGGAACTAGAGCAAAAAATGTTTG
CCAAAGTCGAACTGTTGTTCGACCAAGGAAAGCAGCAGGGAATTTTCAAACCTCTCGATAACCATCTTCTTTCTGCGTTG
AGTTTTGAAACAACCGTCACTCTTGCTCGTCAATACGCTTTAGGTTTTTATCAACTGGATGATTCAACTCTCGATGCAAT
GATTCAAGCCAGTTGGGATGCAATTACTCAACACTAA

Upstream 100 bases:

>100_bases
ACCGAGGATTACCAACAAAGAAACTGCCTTTACAAAAATTTACTGCACAAGTGTATTGCAAAACAGGGGGTATTAGCCGC
TATAATGAACAACCGTTCAT

Downstream 100 bases:

>100_bases
TTTGGAGTTCGCACCAGAATGAAAAAGTGGACATTTTTTATGTTGCTTATCGCGATCCTGCTGTTTGGCAGCGTGATAGG
TTTCAATCTTTTCAAACAAC

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQRNVMSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGTIYRYFRDKDHLLIEVRLHVSQKIAEAVQANL
RDDMSLQERFRTMWLNIWTLAGSCRDIISNRVQYESLPTTTCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSAL
SFETTVTLARQYALGFYQLDDSTLDAMIQASWDAITQH

Sequences:

>Translated_198_residues
MQRNVMSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGTIYRYFRDKDHLLIEVRLHVSQKIAEAVQANL
RDDMSLQERFRTMWLNIWTLAGSCRDIISNRVQYESLPTTTCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSAL
SFETTVTLARQYALGFYQLDDSTLDAMIQASWDAITQH
>Mature_198_residues
MQRNVMSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGTIYRYFRDKDHLLIEVRLHVSQKIAEAVQANL
RDDMSLQERFRTMWLNIWTLAGSCRDIISNRVQYESLPTTTCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSAL
SFETTVTLARQYALGFYQLDDSTLDAMIQASWDAITQH

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22722; Mature: 22722

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRNVMSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGTIYRYFRDKDHL
CCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
LIEVRLHVSQKIAEAVQANLRDDMSLQERFRTMWLNIWTLAGSCRDIISNRVQYESLPTT
EEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSALSFETTVTLARQYALGFYQLD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
DSTLDAMIQASWDAITQH
CHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQRNVMSEIVYGDKQLQILIAAEKLIAEQGFQGLSMHKVAKAANMATGTIYRYFRDKDHL
CCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
LIEVRLHVSQKIAEAVQANLRDDMSLQERFRTMWLNIWTLAGSCRDIISNRVQYESLPTT
EEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TCCNVRELEQKMFAKVELLFDQGKQQGIFKPLDNHLLSALSFETTVTLARQYALGFYQLD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
DSTLDAMIQASWDAITQH
CHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]