Click here to switch to the map view.

The map label for this gene is rdoA [H]

Identifier: 227080272

GI number: 227080272

Start: 33276

End: 34298

Strand: Reverse

Name: rdoA [H]

Synonym: VCM66_0035

Alternate gene names: 227080272

Gene position: 34298-33276 (Counterclockwise)

Preceding gene: 227080273

Following gene: 227080271

Centisome position: 1.19

GC content: 49.27

Gene sequence:

>1023_bases
ATGGTAAAGGGCTCAGTAATGAGCCCTTTTTATTCAATGACCCAAGCCACGTTTCATTTTGATGCTTTAACTCCCGATCT
GATTTGGTACGCGCTGGAAAGTATCGGCATTCGTGCTGAGTCAGGCTTTTTGCCACTCAACAGCTATGAAAACCGCGTCT
ACCAGTTTACCGATGAAAAGCGTCGCCGCTTTGTGGTGAAATTTTATCGCCCACAACGTTGGACCGATGAGCAGATCCAA
GAAGAGCATGATTTCGCGCTCGAACTGGAACAAGAAGAGATCCCTATAGTCCCGCCGCTGAGACTCAATGGCGCGACCCT
ACACCACTACCAAGGCTACCGTTTTGCCCTGTTTACCAGCATGGGCGGTCGCCAATACGAAGTGGATAATGAGGAACACT
TAGAGTGGGTTGGCCGCTTTCTGGGGCGCATTCACAAAGTCGGAGCAAGTAAACCCTTTCTCCACCGCCCAACTCTGTCG
CTGGATGAATACTTACATCAACCCAGACATACCTTGGAGTACAGTCACTGCATTCCTGCCCATTTGCAGCGGGTGTTTTT
TCACGATCTCGATATTTTGATTGCTGAAATCAAGCAGCATTGGGTACCCACCCAGCCTCAGATCCGTCTGCACGGAGACT
GCCACCCCGGCAATATTTTATGGCGCGATGGCCCGATGTTTGTCGATCTGGATGACGCACGCAACGGCCCTGCCATTCAA
GATCTCTGGATGCTGTTGCATGGTGATCGCCAAGACAAACTGATCCAATTAGATATCGTTTTGGAAGGCTACCAAGAGTT
TTGCGATTTTAATCCTCAACAATTGAAACTAATCGAGCCTTTACGTGGTCTACGCATGGTGCACTACATGGCATGGCTCG
CCAAACGCTGGCAAGATCCGGCTTTTCCAATCGCATTTCCGTGGTTTAATGACGCGAAATACTGGGAGAATCAGATCCTC
GCTTTTAAAGAGCAGATTGCCACTTTACAAGAACCCCCGTTATCATTGCAGCCGCAGTGGTAA

Upstream 100 bases:

>100_bases
CTGCGGTCACGACAATTCAGTTTATACTGCACGACGAAAGCCACCAATTTACCCTTGAAGTCGAGAGCCGATTTATTCAA
AAGCTCTGACACTCACCAGT

Downstream 100 bases:

>100_bases
GCCAACACAATAAATCCAATGGAGAAAGTCATGAAAAAGCTGTTTGCACTGGTTGCAACTCTGATGTTAAGCGTGTCAGC
CTATGCGGCTCAATTTAAAG

Product: serine/threonine protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MVKGSVMSPFYSMTQATFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQFTDEKRRRFVVKFYRPQRWTDEQIQ
EEHDFALELEQEEIPIVPPLRLNGATLHHYQGYRFALFTSMGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLS
LDEYLHQPRHTLEYSHCIPAHLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDLDDARNGPAIQ
DLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFNDAKYWENQIL
AFKEQIATLQEPPLSLQPQW

Sequences:

>Translated_340_residues
MVKGSVMSPFYSMTQATFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQFTDEKRRRFVVKFYRPQRWTDEQIQ
EEHDFALELEQEEIPIVPPLRLNGATLHHYQGYRFALFTSMGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLS
LDEYLHQPRHTLEYSHCIPAHLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDLDDARNGPAIQ
DLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFNDAKYWENQIL
AFKEQIATLQEPPLSLQPQW
>Mature_340_residues
MVKGSVMSPFYSMTQATFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQFTDEKRRRFVVKFYRPQRWTDEQIQ
EEHDFALELEQEEIPIVPPLRLNGATLHHYQGYRFALFTSMGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLS
LDEYLHQPRHTLEYSHCIPAHLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDLDDARNGPAIQ
DLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFNDAKYWENQIL
AFKEQIATLQEPPLSLQPQW

Specific function: Probably involved in the extracytoplasmic stress response [H]

COG id: COG2334

COG function: function code R; Putative homoserine kinase type II (protein kinase fold)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdoA family [H]

Homologues:

Organism=Escherichia coli, GI1790290, Length=328, Percent_Identity=55.7926829268293, Blast_Score=396, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002575
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01636 APH [H]

EC number: NA

Molecular weight: Translated: 40347; Mature: 40347

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKGSVMSPFYSMTQATFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQFTDEK
CCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHH
RRRFVVKFYRPQRWTDEQIQEEHDFALELEQEEIPIVPPLRLNGATLHHYQGYRFALFTS
HHEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEEEC
MGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLSLDEYLHQPRHTLEYSHCIPA
CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCHH
HLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDLDDARNGPAIQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCHHH
DLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVHYMAWLAKRWQDP
HHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AFPIAFPWFNDAKYWENQILAFKEQIATLQEPPLSLQPQW
CCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVKGSVMSPFYSMTQATFHFDALTPDLIWYALESIGIRAESGFLPLNSYENRVYQFTDEK
CCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHH
RRRFVVKFYRPQRWTDEQIQEEHDFALELEQEEIPIVPPLRLNGATLHHYQGYRFALFTS
HHEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEEEC
MGGRQYEVDNEEHLEWVGRFLGRIHKVGASKPFLHRPTLSLDEYLHQPRHTLEYSHCIPA
CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCHH
HLQRVFFHDLDILIAEIKQHWVPTQPQIRLHGDCHPGNILWRDGPMFVDLDDARNGPAIQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCHHH
DLWMLLHGDRQDKLIQLDIVLEGYQEFCDFNPQQLKLIEPLRGLRMVHYMAWLAKRWQDP
HHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AFPIAFPWFNDAKYWENQILAFKEQIATLQEPPLSLQPQW
CCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]