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The map label for this gene is rnpA

Identifier: 226951099

GI number: 226951099

Start: 4154356

End: 4154691

Strand: Reverse

Name: rnpA

Synonym: CLM_4152

Alternate gene names: 226951099

Gene position: 4154691-4154356 (Counterclockwise)

Preceding gene: 226951100

Following gene: 226951098

Centisome position: 99.99

GC content: 23.51

Gene sequence:

>336_bases
ATGAAAGAAAATAAAATAAGAAAGAATAAAGAATTTAGACATGTATATAGAAGAGGCAAGTCTTATTCTAATAGGCTTTT
AGTATTATACATATGTAAAAATAGGTGTAATATAAATAGATTAGGTGTATCTGTCAGTAAAAAAGTTGGGAAAAGTGTAA
TTAGAAATAGAGTAAAAAGATTAATAAAAGAAAGCTATAGATTGAATTTAGATGAAAACATGAAAAAAGGTTATGATTTA
GTTTTTATAGCTAGAAATAGTTCTAATGATAGGGATTACAAGGATATAGAAAGTGCATTAATAAATTTATTAAAAAAGGC
AGGCATATATAATTGA

Upstream 100 bases:

>100_bases
TCTTAGAAAAAGAAGACAAAAAGGAAGAAAAAGATTGACAGCATAAGGGCCGCATTAGTGGCCTTTTTCTGCAGATGCAG
AAAAAAGGAGAATATAATCT

Downstream 100 bases:

>100_bases
AAAATTTATTAATATGTATTATTAAGATGTATAGAAAATATATATCTCCTTTAAAGAGACCTAGTTGTAGGTTTTATCCT
ACTTGTTCTCAGTATTCACT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKENKIRKNKEFRHVYRRGKSYSNRLLVLYICKNRCNINRLGVSVSKKVGKSVIRNRVKRLIKESYRLNLDENMKKGYDL
VFIARNSSNDRDYKDIESALINLLKKAGIYN

Sequences:

>Translated_111_residues
MKENKIRKNKEFRHVYRRGKSYSNRLLVLYICKNRCNINRLGVSVSKKVGKSVIRNRVKRLIKESYRLNLDENMKKGYDL
VFIARNSSNDRDYKDIESALINLLKKAGIYN
>Mature_111_residues
MKENKIRKNKEFRHVYRRGKSYSNRLLVLYICKNRCNINRLGVSVSKKVGKSVIRNRVKRLIKESYRLNLDENMKKGYDL
VFIARNSSNDRDYKDIESALINLLKKAGIYN

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CLOB1 (A7FPL5)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001385961.1
- ProteinModelPortal:   A7FPL5
- SMR:   A7FPL5
- STRING:   A7FPL5
- GeneID:   5395608
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_3740
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   KIGNAVM
- ProtClustDB:   PRK00499
- BioCyc:   CBOT441770:CLB_3740-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13185; Mature: 13185

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENKIRKNKEFRHVYRRGKSYSNRLLVLYICKNRCNINRLGVSVSKKVGKSVIRNRVKR
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LIKESYRLNLDENMKKGYDLVFIARNSSNDRDYKDIESALINLLKKAGIYN
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKENKIRKNKEFRHVYRRGKSYSNRLLVLYICKNRCNINRLGVSVSKKVGKSVIRNRVKR
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LIKESYRLNLDENMKKGYDLVFIARNSSNDRDYKDIESALINLLKKAGIYN
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA