Click here to switch to the map view.

The map label for this gene is gidA [H]

Identifier: 226951094

GI number: 226951094

Start: 4149508

End: 4151385

Strand: Reverse

Name: gidA [H]

Synonym: CLM_4147

Alternate gene names: 226951094

Gene position: 4151385-4149508 (Counterclockwise)

Preceding gene: 226951095

Following gene: 226951093

Centisome position: 99.91

GC content: 29.77

Gene sequence:

>1878_bases
ATGAAATATTTAGCTGGAGATTTTGATGTAGTAGTTATTGGCGCAGGTCATGCGGGATGCGAGGCTGCATTAGCTTCTGC
AAGAATGGGATGTAAAACATTAATATGTACTATGAACCTAGATAGTATTGCTCTTATGGCTTGTAATCCTAATATAGGTG
GAACAGCAAAAGGACATTTAGTAAGAGAAATAGATGCTTTAGGTGGAGAAATGGGAATAAATATAGACCATACATTTATA
CAATCTAGAATGCTTAATACTTCTAAGGGTCCAGCAGTTCATTCTTTAAGAGCTCAAGCAGATAAAAAAAGATATAGTGA
GAGAATGAAACATCTACTAGAGAAGGAAGAAAATGTTGTTTTAAGACAGCTAGAAGTTATAGAAATAGATGTAGAGGATA
ATGAAGTTAAAGGTGTTTTAACTAAAAATGGAGCATATTTTACTACAAAAGCTATAATATTATGTACTGGAACTTATTTA
AAGGGTAAAATAATAATAGGAGATATAATATATAGTAGTGGACCAAGTGGTTTGTATCCTGCTAATGATTTATCTCAAAG
TTTATTAGATTTGGGTATAAATCTTAGAAGATTTAAAACAGGAACCCCTGCAAGAATAAATAAAAGATCAGTAGATTTTT
CTAAAATGATAGAACAACCAGGAGACAAAAAAATAGTTCCTTTTTCATTTATTGATAATAAGCTAGATAAAGACCAGATT
TCTTGTTATTTAACTTATACATCTGAAGAAACTCATAAAATAATACATGAAAATATACATAGATCTCCATTATATAATGG
ATCAATAGAAGGGGTAGGTCCAAGATACTGCCCATCTATTGAAGATAAGATTGTTAGATTTCCAGATAAAGATAAGCATC
AAATATTCATAGAACCAGAAGGTGAAAATACAGAAGAATTATATGTTGGCGGTATGTCTAGTTCATTACCAGAAGATGTT
CAAATAAAAATGTATAGAAGTGTACCAGGTTTAGAAAATGCAGAAATACTAAGAACTGCCTATGCTATAGAGTATGATTG
TATTGATCCTCAACAACTAGATTTAACCTTAGAATTCAAAAATATAAATGGGTTATATGGGGCAGGTCAATTTAATGGAA
GTTCAGGTTATGAGGAAGCTGCAGCACAGGGACTTATAGCTGGAATTAATGCTGTGTTAAAAATAAAAGAAAAAAACCCA
TTAATATTGAAAAGATCAGATGCTTATATAGGTGTACTTATAGATGATTTAGTAACAAAGGGCACAAATGAGCCTTATAG
AATGATGACATCAAGAGCAGAATATAGATTGCTGTTAAGACAAGATAATGCAGATTTAAGATTAACAGAGTTAGGCTATA
AAGTCGGACTTGTAAAAGAGGATAGGTATAATAAATTTCTAAATAGGAAAAAAAATGTAGAAAATGAAATAGAAAGATTA
AGAAATATGCAAATAACAGGAAAAAGAGAAATAAACGAATTTTTATTAGAGAAAGGGTCTACTGAACTAAAAAAGCCTAT
TAGTTTATATGAATTAATAAAAAGACCAGAATTAGATTATTTTAAAGTTGAACCTTTAGATGATAAAAGACCAAGTTTAA
GTGATGATGAAAAAGAAGAAATAAATATAATTGCAAAATATGAGGGATATATAAACAAACAGTTAGAACAAGTTGAGCAA
TTTAAGAAGTATGAAGATAGATTAATACCGAAAAGTATTAATTATCTAGATATAAAAGGGTTGAGATTAGAGGCTATTCA
AAAATTGGAAAAAATAAAGCCTATAAATATAGGGCAGGCTTCTAGAATTTCAGGTGTATCTCCAGCAGATATATCAGTAT
TACTTATATATATGGAAAGAAAAAATAGAGAAAACTAG

Upstream 100 bases:

>100_bases
ATGCGTGGAAATATCTTGGAGAAATTACTGGTGATACTTTAGATGAGAACATTATAGATAAAATATTTTCTGAATTTTGT
TTAGGAAAGTAGGTAATTAT

Downstream 100 bases:

>100_bases
AAAATCCTTTTGGAGGTTTTTAAATGGAATTTTTCAACATACTACAATCAGCATGCAATGATGTTAATTTAGATTTTAAT
GATAAAAAATATAATCAGCT

Product: tRNA uridine 5-carboxymethylaminomethyl modification protein GidA

Products: NA

Alternate protein names: Glucose-inhibited division protein A [H]

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MKYLAGDFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDALGGEMGINIDHTFI
QSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVIEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYL
KGKIIIGDIIYSSGPSGLYPANDLSQSLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQI
SCYLTYTSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEELYVGGMSSSLPEDV
QIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYGAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNP
LILKRSDAYIGVLIDDLVTKGTNEPYRMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERL
RNMQITGKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAKYEGYINKQLEQVEQ
FKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGVSPADISVLLIYMERKNREN

Sequences:

>Translated_625_residues
MKYLAGDFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDALGGEMGINIDHTFI
QSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVIEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYL
KGKIIIGDIIYSSGPSGLYPANDLSQSLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQI
SCYLTYTSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEELYVGGMSSSLPEDV
QIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYGAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNP
LILKRSDAYIGVLIDDLVTKGTNEPYRMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERL
RNMQITGKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAKYEGYINKQLEQVEQ
FKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGVSPADISVLLIYMERKNREN
>Mature_625_residues
MKYLAGDFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDALGGEMGINIDHTFI
QSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVIEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYL
KGKIIIGDIIYSSGPSGLYPANDLSQSLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQI
SCYLTYTSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEELYVGGMSSSLPEDV
QIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYGAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNP
LILKRSDAYIGVLIDDLVTKGTNEPYRMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERL
RNMQITGKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAKYEGYINKQLEQVEQ
FKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGVSPADISVLLIYMERKNREN

Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]

COG id: COG0445

COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family [H]

Homologues:

Organism=Homo sapiens, GI74024895, Length=638, Percent_Identity=40.5956112852665, Blast_Score=443, Evalue=1e-124,
Organism=Homo sapiens, GI19882217, Length=661, Percent_Identity=39.1830559757943, Blast_Score=429, Evalue=1e-120,
Organism=Homo sapiens, GI183227703, Length=678, Percent_Identity=38.2005899705015, Blast_Score=423, Evalue=1e-118,
Organism=Escherichia coli, GI2367273, Length=616, Percent_Identity=49.6753246753247, Blast_Score=611, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17534255, Length=620, Percent_Identity=39.8387096774194, Blast_Score=458, Evalue=1e-129,
Organism=Saccharomyces cerevisiae, GI6321202, Length=620, Percent_Identity=42.9032258064516, Blast_Score=477, Evalue=1e-135,
Organism=Drosophila melanogaster, GI24658174, Length=632, Percent_Identity=41.9303797468354, Blast_Score=443, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004416
- InterPro:   IPR002218
- InterPro:   IPR020595 [H]

Pfam domain/function: PF01134 GIDA [H]

EC number: NA

Molecular weight: Translated: 70565; Mature: 70565

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLAGDFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHL
CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCCHH
VREIDALGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVV
HHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LRQLEVIEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYP
EEEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEECCEEECEEEEEEEEECCCCCCCCC
ANDLSQSLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQI
CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEHHHHCCCCCCCCE
SCYLTYTSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPE
EEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCEEEEECC
GENTEELYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFK
CCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHEEEEEEECCCCCEEEEEEEEE
NINGLYGAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTK
CCCCEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCEEEEEHHHHHHC
GTNEPYRMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERL
CCCCHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEECHHHHHHHHHHCCHHHHHHHH
RNMQITGKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEE
HCCCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
INIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQA
EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCC
SRISGVSPADISVLLIYMERKNREN
CCCCCCCCCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MKYLAGDFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHL
CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCCHH
VREIDALGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVV
HHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LRQLEVIEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYP
EEEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEECCEEECEEEEEEEEECCCCCCCCC
ANDLSQSLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQI
CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEHHHHCCCCCCCCE
SCYLTYTSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPE
EEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCEEEEECC
GENTEELYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFK
CCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHEEEEEEECCCCCEEEEEEEEE
NINGLYGAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTK
CCCCEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCEEEEEHHHHHHC
GTNEPYRMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERL
CCCCHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEECHHHHHHHHHHCCHHHHHHHH
RNMQITGKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEE
HCCCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
INIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQA
EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCC
SRISGVSPADISVLLIYMERKNREN
CCCCCCCCCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA