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The map label for this gene is sodC [H]

Identifier: 226950861

GI number: 226950861

Start: 3917961

End: 3918464

Strand: Reverse

Name: sodC [H]

Synonym: CLM_3874

Alternate gene names: 226950861

Gene position: 3918464-3917961 (Counterclockwise)

Preceding gene: 226950862

Following gene: 226950860

Centisome position: 94.3

GC content: 35.32

Gene sequence:

>504_bases
ATGAGAAAGAAGTATATATGTAAGAATGCTATTTCCTACATAAAAGGTGGACCTCTAGCCCCTGAAATTGCAGGAATTGT
ATTATTTGAAGATGTACCCGGCGGTACTGTAGTATATGTAAATATTACAGGTCTTCCAGATTACCAACCTGCAAAAGGAG
AAAAGGGGCCTATTGGACCACATGGATTTCATATTCATGAATTTGGAAATTGTAATGTAGGATTATCTGAAGAACCATTT
AAAGACGCAGGCGAACACTGGAACCCTACAAATCAGCCACATGGTAATCATGCAGGAGATTTTCCAGTATTGTTTTCAAA
TAATGGAAAATCTATTATGTGGTTTTTTACTAATAAATTCAAGGTCAAAGATATTATTGGAAAATCTATCATTATTCATG
AGAATCCGGATGACTACAGATCCCAACCATCTGGAAATGCTGGTAGAAGACTTGCATGTGGAATAATAAATGCTTACAAT
TGGTGTATACCATATTTATGGTAA

Upstream 100 bases:

>100_bases
AGAAGCTTTAATAAACAATTTACAGTTTTTTTTAACACTCCAAGTATGTATAACATAATGTAATATAGAGTGGATTAATT
CCAGAAACGGAGTGAATTAT

Downstream 100 bases:

>100_bases
CATAAGTACAGATTTACATTACAAAAAAGCTGATTCAAGGAAAATAAACTCGTTGAGGTATAAAAAAAAGTTGTTCAAAA
ATAAGGAGAGAAAATCAGGA

Product: copper/zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRKKYICKNAISYIKGGPLAPEIAGIVLFEDVPGGTVVYVNITGLPDYQPAKGEKGPIGPHGFHIHEFGNCNVGLSEEPF
KDAGEHWNPTNQPHGNHAGDFPVLFSNNGKSIMWFFTNKFKVKDIIGKSIIIHENPDDYRSQPSGNAGRRLACGIINAYN
WCIPYLW

Sequences:

>Translated_167_residues
MRKKYICKNAISYIKGGPLAPEIAGIVLFEDVPGGTVVYVNITGLPDYQPAKGEKGPIGPHGFHIHEFGNCNVGLSEEPF
KDAGEHWNPTNQPHGNHAGDFPVLFSNNGKSIMWFFTNKFKVKDIIGKSIIIHENPDDYRSQPSGNAGRRLACGIINAYN
WCIPYLW
>Mature_167_residues
MRKKYICKNAISYIKGGPLAPEIAGIVLFEDVPGGTVVYVNITGLPDYQPAKGEKGPIGPHGFHIHEFGNCNVGLSEEPF
KDAGEHWNPTNQPHGNHAGDFPVLFSNNGKSIMWFFTNKFKVKDIIGKSIIIHENPDDYRSQPSGNAGRRLACGIINAYN
WCIPYLW

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=165, Percent_Identity=33.9393939393939, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI4507149, Length=170, Percent_Identity=31.7647058823529, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI118582275, Length=160, Percent_Identity=28.125, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1787934, Length=114, Percent_Identity=35.9649122807018, Blast_Score=60, Evalue=6e-11,
Organism=Drosophila melanogaster, GI281363087, Length=113, Percent_Identity=38.0530973451327, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24652342, Length=113, Percent_Identity=38.0530973451327, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18511; Mature: 18511

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKYICKNAISYIKGGPLAPEIAGIVLFEDVPGGTVVYVNITGLPDYQPAKGEKGPIGP
CCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCC
HGFHIHEFGNCNVGLSEEPFKDAGEHWNPTNQPHGNHAGDFPVLFSNNGKSIMWFFTNKF
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCE
KVKDIIGKSIIIHENPDDYRSQPSGNAGRRLACGIINAYNWCIPYLW
EEEEECCCEEEEECCCHHHHCCCCCCCCCEEEEEEECCCCEEECCCC
>Mature Secondary Structure
MRKKYICKNAISYIKGGPLAPEIAGIVLFEDVPGGTVVYVNITGLPDYQPAKGEKGPIGP
CCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCC
HGFHIHEFGNCNVGLSEEPFKDAGEHWNPTNQPHGNHAGDFPVLFSNNGKSIMWFFTNKF
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCE
KVKDIIGKSIIIHENPDDYRSQPSGNAGRRLACGIINAYNWCIPYLW
EEEEECCCEEEEECCCHHHHCCCCCCCCCEEEEEEECCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]