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The map label for this gene is whiA

Identifier: 226950825

GI number: 226950825

Start: 3879060

End: 3880007

Strand: Reverse

Name: whiA

Synonym: CLM_3837

Alternate gene names: 226950825

Gene position: 3880007-3879060 (Counterclockwise)

Preceding gene: 226950826

Following gene: 226950824

Centisome position: 93.38

GC content: 26.05

Gene sequence:

>948_bases
ATGTCTTTTTCATTAAAAGTAAAAAATGAAGTATGTAAACATGTAGAAGTAAATAAACAAGAAGCCATAGCAGAATTATC
AGCAATAATGAAGGTAAGTGGTACATTATTATTTACTAATAAACAATTTAATTTTAAAATAACTACAGAAAATGCAGCTA
TTGCTAGATTAGTTTTTAAAATTTTAAAAGAACATTTTGGTATCCATACAGAAATAATGATAAAGAAAAACAATTCTTTA
AAAAAGAATAATATATATATTATACTAATATCTGAAGAAGAAGGAGTAAAATCCTTATTAAAAGAAGTTGGTATAATTAA
AGAAACTATAAATGTATTTAGTTTAGATTATAACATACCTAAGAGTATTATAGAATGTGATGAGTGCAGGAGAGCTTATA
TAAGAGGGGCTTTTTTAGGTGGAGGAAGTATAAGTAATCCGGAAAAAACATATCACTTAGAATTTGTTACTCATAATGAG
GAGTATGCTAAAGACTTAAGTAATTTAATAAATTCGTATAATTTAAATTCTAAAGTAATAAAAAGAAAGAATAGTTATAT
AATTTACTTAAAAGAAGGAGAGCAAATAGTAGATTTATTAAATATAATAGGAGCTCATGCCTCATTATTAGAGTTAGAAA
ATGTTAGAATAATGAAAGAAATGAGAAATAATGTTAATAGACTGGTAAACTGTGAAACTGCTAATTTGAGTAAGACGGTT
AATGCTGCTGTAAGACAAGTAGAGAGTATAAAGTTTATAGAAAGAGAAATAGGATTAGGAAGATTACCTAAAAATTTAAG
GGACGTAGCAGAGCTAAGAATTAAATATCCTGATGAATCCTTAAGAGAATTAGGAAAGATGTTAAATCCACCAGTAGGAA
AATCAGGAGTTAATCATAGGTTAAGAAGAATAGAGAAGATTGCAGATGAATTAAAACAAGGAATTTAA

Upstream 100 bases:

>100_bases
AATGGAAAAGAAATTGTTATATGATAAGAAGAAAATAATAGAGTACTTCTATTTGTCAGAAAGATTAAAGGAAAATAAAA
ATAAGCAGAGGTAGAGAACT

Downstream 100 bases:

>100_bases
AATAAAAATAACATAATATTTTGCAAAGGAGAGTGTCTCGAAATTTATTTTGTTGTGAGATACTCTCTTTGTTTGAGTTA
TATAAAGTTTAAGATTATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSFSLKVKNEVCKHVEVNKQEAIAELSAIMKVSGTLLFTNKQFNFKITTENAAIARLVFKILKEHFGIHTEIMIKKNNSL
KKNNIYIILISEEEGVKSLLKEVGIIKETINVFSLDYNIPKSIIECDECRRAYIRGAFLGGGSISNPEKTYHLEFVTHNE
EYAKDLSNLINSYNLNSKVIKRKNSYIIYLKEGEQIVDLLNIIGAHASLLELENVRIMKEMRNNVNRLVNCETANLSKTV
NAAVRQVESIKFIEREIGLGRLPKNLRDVAELRIKYPDESLRELGKMLNPPVGKSGVNHRLRRIEKIADELKQGI

Sequences:

>Translated_315_residues
MSFSLKVKNEVCKHVEVNKQEAIAELSAIMKVSGTLLFTNKQFNFKITTENAAIARLVFKILKEHFGIHTEIMIKKNNSL
KKNNIYIILISEEEGVKSLLKEVGIIKETINVFSLDYNIPKSIIECDECRRAYIRGAFLGGGSISNPEKTYHLEFVTHNE
EYAKDLSNLINSYNLNSKVIKRKNSYIIYLKEGEQIVDLLNIIGAHASLLELENVRIMKEMRNNVNRLVNCETANLSKTV
NAAVRQVESIKFIEREIGLGRLPKNLRDVAELRIKYPDESLRELGKMLNPPVGKSGVNHRLRRIEKIADELKQGI
>Mature_314_residues
SFSLKVKNEVCKHVEVNKQEAIAELSAIMKVSGTLLFTNKQFNFKITTENAAIARLVFKILKEHFGIHTEIMIKKNNSLK
KNNIYIILISEEEGVKSLLKEVGIIKETINVFSLDYNIPKSIIECDECRRAYIRGAFLGGGSISNPEKTYHLEFVTHNEE
YAKDLSNLINSYNLNSKVIKRKNSYIIYLKEGEQIVDLLNIIGAHASLLELENVRIMKEMRNNVNRLVNCETANLSKTVN
AAVRQVESIKFIEREIGLGRLPKNLRDVAELRIKYPDESLRELGKMLNPPVGKSGVNHRLRRIEKIADELKQGI

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_CLOB1 (A7FYW9)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001385692.1
- ProteinModelPortal:   A7FYW9
- STRING:   A7FYW9
- GeneID:   5395160
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_3431
- eggNOG:   COG1481
- HOGENOM:   HBG485718
- OMA:   LERKKGY
- ProtClustDB:   CLSK882446
- BioCyc:   CBOT441770:CLB_3431-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR004042
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 35924; Mature: 35793

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50819 INTEIN_ENDONUCLEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSLKVKNEVCKHVEVNKQEAIAELSAIMKVSGTLLFTNKQFNFKITTENAAIARLVFK
CCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCHHHHHHHHH
ILKEHFGIHTEIMIKKNNSLKKNNIYIILISEEEGVKSLLKEVGIIKETINVFSLDYNIP
HHHHHCCCCEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCC
KSIIECDECRRAYIRGAFLGGGSISNPEKTYHLEFVTHNEEYAKDLSNLINSYNLNSKVI
HHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCHHHH
KRKNSYIIYLKEGEQIVDLLNIIGAHASLLELENVRIMKEMRNNVNRLVNCETANLSKTV
CCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
NAAVRQVESIKFIEREIGLGRLPKNLRDVAELRIKYPDESLRELGKMLNPPVGKSGVNHR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCHHHHH
LRRIEKIADELKQGI
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SFSLKVKNEVCKHVEVNKQEAIAELSAIMKVSGTLLFTNKQFNFKITTENAAIARLVFK
CCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCHHHHHHHHH
ILKEHFGIHTEIMIKKNNSLKKNNIYIILISEEEGVKSLLKEVGIIKETINVFSLDYNIP
HHHHHCCCCEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCC
KSIIECDECRRAYIRGAFLGGGSISNPEKTYHLEFVTHNEEYAKDLSNLINSYNLNSKVI
HHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCHHHH
KRKNSYIIYLKEGEQIVDLLNIIGAHASLLELENVRIMKEMRNNVNRLVNCETANLSKTV
CCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
NAAVRQVESIKFIEREIGLGRLPKNLRDVAELRIKYPDESLRELGKMLNPPVGKSGVNHR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCHHHHH
LRRIEKIADELKQGI
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA