Click here to switch to the map view.

The map label for this gene is yffB [H]

Identifier: 226950815

GI number: 226950815

Start: 3867429

End: 3867830

Strand: Reverse

Name: yffB [H]

Synonym: CLM_3827

Alternate gene names: 226950815

Gene position: 3867830-3867429 (Counterclockwise)

Preceding gene: 226950816

Following gene: 226950814

Centisome position: 93.08

GC content: 33.08

Gene sequence:

>402_bases
ATGAAGTATTCAAAAGCTACAAATTATGCCCTTCACACCATGCTTTTTCTTGCAATGGATACACCTAATAAGATTGTTGG
TGTACAGGAGTTGGCAGAAAAACAAAAAGTTTCTCCGACGTATTTGTCCAAAATATTGACTAAGTTAGTTAAGGAAGGAA
TGATTAATTCTTCTTCAGGTGTCAACGGAGGTTATTCGCTTAGTCAAAATTGGGAAGATATTTCATTCTTGGACATCATA
CATGCTATTGAAGGTAAATCATCTTTATTTGATTGCTGTTTAGATTCTCCTTCAGAATGTGTTATAAAAAAAGTAATGCT
TTCGGCAGAGAAGAAAATGGAGGAAGAGTTAAGGAATCAAAAAATATCAGATCTTGTTAAGAAAATACCTGTGGATTTAT
AA

Upstream 100 bases:

>100_bases
ACTAAGCTATATAAAGTAAATAAAAAACTATTTGACAAAGTGAAACAATTAAGGCTATTATAGATATATCAAGTCTTTTA
TTGGAGGCGTTTTATATATT

Downstream 100 bases:

>100_bases
TCCACTCTTATTTTTAAATGAATTGTAGATATAAGGAGTCTTTTAAGTCTTTTAATTATGGTTTTAAATAGTATAGATAA
ATATCAAATTTAATTGAGCT

Product: RRF2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSGVNGGYSLSQNWEDISFLDII
HAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQKISDLVKKIPVDL

Sequences:

>Translated_133_residues
MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSGVNGGYSLSQNWEDISFLDII
HAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQKISDLVKKIPVDL
>Mature_133_residues
MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSGVNGGYSLSQNWEDISFLDII
HAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQKISDLVKKIPVDL

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 14861; Mature: 14861

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQ
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KISDLVKKIPVDL
HHHHHHHHCCCCC
>Mature Secondary Structure
MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSECVIKKVMLSAEKKMEEELRNQ
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KISDLVKKIPVDL
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7773380; 11337471 [H]