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The map label for this gene is ydeM [C]

Identifier: 226950767

GI number: 226950767

Start: 3800376

End: 3802523

Strand: Reverse

Name: ydeM [C]

Synonym: CLM_3777

Alternate gene names: 226950767

Gene position: 3802523-3800376 (Counterclockwise)

Preceding gene: 226950768

Following gene: 226950766

Centisome position: 91.51

GC content: 26.16

Gene sequence:

>2148_bases
ATGAGTAATAGATATAAAATGGGTTCTGATCTTGAGCAATGGATGTCAGGTAAAAACTTAAATGTAACATTTATACTAAC
ACAAGATTGTAACCTTAGATGTAAATATTGTTATGAAGTTAATAAAAACAATCAAAATGTAATGAGTTTTGGCACAGCTA
AAAAGGCCATAGATTACATTCTTGACAATCATGATATATTTACTAGTAAAGCAGTAATATGGGATTTCATTGGTGGTGAA
CCATTATTAGAGATAGACTTAATGGATAAAATTATAGATTATATAATGATGAAAACTTATAAAGATAACCACCCTTGGTT
TTCATTTTATAGAATAAACATTTCAACAAATGGAATTTTATATAATGATGAAAAAGTTCAAAAATTTTTAGAAAAATATA
AAGATAAATGTAGCATTAGTATAAGTATAGATGGTAATAAAGAAAAACATGATTTACAAAGAGTTTATCCTAATGGTAGA
GGTTCTTATGATGATGTTGTTAAAAATATTCCTTTATGGCTTGAACAAGTTCCATCAGCTGCTACTAAAGTAACTATTGG
AAGTGATGACATTCCGTATTTAAAAGATAGTATTATTCATTTATGGAATCTTGGAATAAAAGAGGTCCCCGCTAATGTTG
TTTTTGAAGATGTATGGAAAGATGGAGATGATATTTTATTTGAAAAACAACTAAAAGAATTAGCTGATTATGTAATAGAT
AACAACTTATTAGATAAATACAATACTACACTTTTTAGTGAAAATTTAGGTGGACCATATAGAGAAGAAAAGCTTCATCA
AAATTCCTGTGGTACAGGATTCATGCTGGCTGTTGATGCAAAAGGGAATTTTTATCCTTGTCTAAGATATGCGGGATTTT
CGTTGCAAGATCAGGCGCCATATATTATTGGAAACGTTGAAGAAGGAGTAAATTTTGATAAACTAAGGCCTTTCTTAGGA
GCTACCACAGAAAATATAAATGATGAAGAGTGCTTAGAATGTGATATTGCAACTGGTTGTAGTTGGTGTGAAGGTCAATG
CTATGATTCATCAAAAATAGGGACAAACTATAAAAGAAATAAAGCTATTTGCAAAATGCATAAAGCTAGATTTAGAGCAA
ACGAATATTTTTGGGGAAGACTCAGAGATGAAGATGGCTTTGAAATGAAACCCAAAAATAGACGTAAACATTTATTCTTT
ATAATGGACGATAATTGTGTTGAACATTGTAATTATAATTCTAATTCAAAGGAAAATGTTATGCCAGATGAAATTTTAAA
AAATGGTTTAGAATTTTGTGAAAAAAACTTATATGTGCCTATAATATTAAATTCCAAAAATAACTCCAATATAAAAAATA
TTAGCAGATTCTCTAATATAGATAGATATGAGATATATAACAATGATACAGAATTAATTAACAATAAATTAAAAAAGATT
CAAGTAGTTACTCCTGAAACAATTGATAACTCCATTAGTACTGATACATGCATATTAAATTTAAGAGAAAACCAAATAAA
AGATATGTACATGTATGCTAAGAAACTATTTAAATATTGTAATAGAATTAATTTAAATATTAAAGATTATACATATAATC
TTGATTTAAATTTATATAAAGAACAATTACTAAAGATTTCAAAATTATTGTATGAATACAGTTTAAAACATGAGAATAAA
GAATTTAATAAAATATCCGATCTTTGGTATTTAGAGAAAATGAATAATTGCGATGCTGGTGATAAAAATTTCACGTTGGC
ACCTAATGGTAAATTATATATTTGTCCTAAATTTTATTTTAATGATAAAGAAAGTTATATAGGAGATATAGTAAATGGTA
TTAAATTAAACTATGATAATTTACTTAAATTAAATTATTCTCCTTTTTGTAAAGAGTGTAACAAATATCAATGTGATCGT
TGTGTTTATATGAATAAGAAATTAACCAATGAATATAATGTTCCATCAGCATTGCAATGTAGAATAAGCCATATTGAAAA
AGAAGTTTCAGATAACTTTATTAGTAATTATACAAATTCTAAAATAAAGGATGAAAGTTATAAGCCTGATAAAAATTATA
ATTCTCCTGTAGAAAAATTATATAATGAGCAAATTGGTGAGACATATGATGTAAACTGTTTCTTATAA

Upstream 100 bases:

>100_bases
ACTCATAACAAATTAATATCGAATTGCGAAAATTATAAAAATCTTTTTTTAAATCAAATAAATGATATTGAACAAAAAAT
TATATAAGAGGTGAATTTTT

Downstream 100 bases:

>100_bases
AATTAAAAAATATTTAAAGGAGTAATATGTATGAATAGAAAAATATTAGCAACAGTTACTGAAGAGGAAAGAGATGTTGT
AGAGGAATTATATGAGAGAA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 715; Mature: 714

Protein sequence:

>715_residues
MSNRYKMGSDLEQWMSGKNLNVTFILTQDCNLRCKYCYEVNKNNQNVMSFGTAKKAIDYILDNHDIFTSKAVIWDFIGGE
PLLEIDLMDKIIDYIMMKTYKDNHPWFSFYRINISTNGILYNDEKVQKFLEKYKDKCSISISIDGNKEKHDLQRVYPNGR
GSYDDVVKNIPLWLEQVPSAATKVTIGSDDIPYLKDSIIHLWNLGIKEVPANVVFEDVWKDGDDILFEKQLKELADYVID
NNLLDKYNTTLFSENLGGPYREEKLHQNSCGTGFMLAVDAKGNFYPCLRYAGFSLQDQAPYIIGNVEEGVNFDKLRPFLG
ATTENINDEECLECDIATGCSWCEGQCYDSSKIGTNYKRNKAICKMHKARFRANEYFWGRLRDEDGFEMKPKNRRKHLFF
IMDDNCVEHCNYNSNSKENVMPDEILKNGLEFCEKNLYVPIILNSKNNSNIKNISRFSNIDRYEIYNNDTELINNKLKKI
QVVTPETIDNSISTDTCILNLRENQIKDMYMYAKKLFKYCNRINLNIKDYTYNLDLNLYKEQLLKISKLLYEYSLKHENK
EFNKISDLWYLEKMNNCDAGDKNFTLAPNGKLYICPKFYFNDKESYIGDIVNGIKLNYDNLLKLNYSPFCKECNKYQCDR
CVYMNKKLTNEYNVPSALQCRISHIEKEVSDNFISNYTNSKIKDESYKPDKNYNSPVEKLYNEQIGETYDVNCFL

Sequences:

>Translated_715_residues
MSNRYKMGSDLEQWMSGKNLNVTFILTQDCNLRCKYCYEVNKNNQNVMSFGTAKKAIDYILDNHDIFTSKAVIWDFIGGE
PLLEIDLMDKIIDYIMMKTYKDNHPWFSFYRINISTNGILYNDEKVQKFLEKYKDKCSISISIDGNKEKHDLQRVYPNGR
GSYDDVVKNIPLWLEQVPSAATKVTIGSDDIPYLKDSIIHLWNLGIKEVPANVVFEDVWKDGDDILFEKQLKELADYVID
NNLLDKYNTTLFSENLGGPYREEKLHQNSCGTGFMLAVDAKGNFYPCLRYAGFSLQDQAPYIIGNVEEGVNFDKLRPFLG
ATTENINDEECLECDIATGCSWCEGQCYDSSKIGTNYKRNKAICKMHKARFRANEYFWGRLRDEDGFEMKPKNRRKHLFF
IMDDNCVEHCNYNSNSKENVMPDEILKNGLEFCEKNLYVPIILNSKNNSNIKNISRFSNIDRYEIYNNDTELINNKLKKI
QVVTPETIDNSISTDTCILNLRENQIKDMYMYAKKLFKYCNRINLNIKDYTYNLDLNLYKEQLLKISKLLYEYSLKHENK
EFNKISDLWYLEKMNNCDAGDKNFTLAPNGKLYICPKFYFNDKESYIGDIVNGIKLNYDNLLKLNYSPFCKECNKYQCDR
CVYMNKKLTNEYNVPSALQCRISHIEKEVSDNFISNYTNSKIKDESYKPDKNYNSPVEKLYNEQIGETYDVNCFL
>Mature_714_residues
SNRYKMGSDLEQWMSGKNLNVTFILTQDCNLRCKYCYEVNKNNQNVMSFGTAKKAIDYILDNHDIFTSKAVIWDFIGGEP
LLEIDLMDKIIDYIMMKTYKDNHPWFSFYRINISTNGILYNDEKVQKFLEKYKDKCSISISIDGNKEKHDLQRVYPNGRG
SYDDVVKNIPLWLEQVPSAATKVTIGSDDIPYLKDSIIHLWNLGIKEVPANVVFEDVWKDGDDILFEKQLKELADYVIDN
NLLDKYNTTLFSENLGGPYREEKLHQNSCGTGFMLAVDAKGNFYPCLRYAGFSLQDQAPYIIGNVEEGVNFDKLRPFLGA
TTENINDEECLECDIATGCSWCEGQCYDSSKIGTNYKRNKAICKMHKARFRANEYFWGRLRDEDGFEMKPKNRRKHLFFI
MDDNCVEHCNYNSNSKENVMPDEILKNGLEFCEKNLYVPIILNSKNNSNIKNISRFSNIDRYEIYNNDTELINNKLKKIQ
VVTPETIDNSISTDTCILNLRENQIKDMYMYAKKLFKYCNRINLNIKDYTYNLDLNLYKEQLLKISKLLYEYSLKHENKE
FNKISDLWYLEKMNNCDAGDKNFTLAPNGKLYICPKFYFNDKESYIGDIVNGIKLNYDNLLKLNYSPFCKECNKYQCDRC
VYMNKKLTNEYNVPSALQCRISHIEKEVSDNFISNYTNSKIKDESYKPDKNYNSPVEKLYNEQIGETYDVNCFL

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 83695; Mature: 83564

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00589 PTS_HPR_SER ; PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRYKMGSDLEQWMSGKNLNVTFILTQDCNLRCKYCYEVNKNNQNVMSFGTAKKAIDYI
CCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEECCHHHHHHHHH
LDNHDIFTSKAVIWDFIGGEPLLEIDLMDKIIDYIMMKTYKDNHPWFSFYRINISTNGIL
HCCCCEEECCHHEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEE
YNDEKVQKFLEKYKDKCSISISIDGNKEKHDLQRVYPNGRGSYDDVVKNIPLWLEQVPSA
ECHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHCCHHHHHCCCC
ATKVTIGSDDIPYLKDSIIHLWNLGIKEVPANVVFEDVWKDGDDILFEKQLKELADYVID
CEEEEECCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
NNLLDKYNTTLFSENLGGPYREEKLHQNSCGTGFMLAVDAKGNFYPCLRYAGFSLQDQAP
CCHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHCCCCCCCCCC
YIIGNVEEGVNFDKLRPFLGATTENINDEECLECDIATGCSWCEGQCYDSSKIGTNYKRN
EEEECHHHCCCHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCHHH
KAICKMHKARFRANEYFWGRLRDEDGFEMKPKNRRKHLFFIMDDNCVEHCNYNSNSKENV
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCC
MPDEILKNGLEFCEKNLYVPIILNSKNNSNIKNISRFSNIDRYEIYNNDTELINNKLKKI
CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHEE
QVVTPETIDNSISTDTCILNLRENQIKDMYMYAKKLFKYCNRINLNIKDYTYNLDLNLYK
EEECCHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHH
EQLLKISKLLYEYSLKHENKEFNKISDLWYLEKMNNCDAGDKNFTLAPNGKLYICPKFYF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEEHEE
NDKESYIGDIVNGIKLNYDNLLKLNYSPFCKECNKYQCDRCVYMNKKLTNEYNVPSALQC
CCHHHHHHHHHHCEEECCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHH
RISHIEKEVSDNFISNYTNSKIKDESYKPDKNYNSPVEKLYNEQIGETYDVNCFL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEC
>Mature Secondary Structure 
SNRYKMGSDLEQWMSGKNLNVTFILTQDCNLRCKYCYEVNKNNQNVMSFGTAKKAIDYI
CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEECCHHHHHHHHH
LDNHDIFTSKAVIWDFIGGEPLLEIDLMDKIIDYIMMKTYKDNHPWFSFYRINISTNGIL
HCCCCEEECCHHEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEE
YNDEKVQKFLEKYKDKCSISISIDGNKEKHDLQRVYPNGRGSYDDVVKNIPLWLEQVPSA
ECHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHCCHHHHHCCCC
ATKVTIGSDDIPYLKDSIIHLWNLGIKEVPANVVFEDVWKDGDDILFEKQLKELADYVID
CEEEEECCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
NNLLDKYNTTLFSENLGGPYREEKLHQNSCGTGFMLAVDAKGNFYPCLRYAGFSLQDQAP
CCHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHCCCCCCCCCC
YIIGNVEEGVNFDKLRPFLGATTENINDEECLECDIATGCSWCEGQCYDSSKIGTNYKRN
EEEECHHHCCCHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCHHH
KAICKMHKARFRANEYFWGRLRDEDGFEMKPKNRRKHLFFIMDDNCVEHCNYNSNSKENV
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCC
MPDEILKNGLEFCEKNLYVPIILNSKNNSNIKNISRFSNIDRYEIYNNDTELINNKLKKI
CHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHEE
QVVTPETIDNSISTDTCILNLRENQIKDMYMYAKKLFKYCNRINLNIKDYTYNLDLNLYK
EEECCHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHH
EQLLKISKLLYEYSLKHENKEFNKISDLWYLEKMNNCDAGDKNFTLAPNGKLYICPKFYF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEEHEE
NDKESYIGDIVNGIKLNYDNLLKLNYSPFCKECNKYQCDRCVYMNKKLTNEYNVPSALQC
CCHHHHHHHHHHCEEECCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHH
RISHIEKEVSDNFISNYTNSKIKDESYKPDKNYNSPVEKLYNEQIGETYDVNCFL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]