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The map label for this gene is yerC [H]

Identifier: 226950698

GI number: 226950698

Start: 3720888

End: 3721187

Strand: Reverse

Name: yerC [H]

Synonym: CLM_3706

Alternate gene names: 226950698

Gene position: 3721187-3720888 (Counterclockwise)

Preceding gene: 226950699

Following gene: 226950697

Centisome position: 89.55

GC content: 31.33

Gene sequence:

>300_bases
ATGGATCAGTATAAATCTAAATTAGAAAGCGAAGAAATGGACTTTCTATGTGAGGCTTTTTTAAGTTTAAAAACCAAAGA
AGAATGTTATAGGTTTTTTGACGATATATGTACCATTAATGAGATAAGAGCTTTAGAACAAAGAATCCAAGTAGCTAGAA
TGCTTAGAAAGAAAATTACATACTTGGAAATAGCGGCGGCTACAGGAGCTAGTACTGCTACTATAAGCAGAGTAAATAGA
TGTCTTAACTATGGAAGTGAGGGCTATAAAATAGTATTAAATAGAATAGAGAATAAATAG

Upstream 100 bases:

>100_bases
TATTATTATATATTCACTTGATCTTGTAGATTAATATGTTAATACGTGATAGAATTAAAGTATAATAATAAATTGGAGTT
CGGATAAGGAGCTGAAACAT

Downstream 100 bases:

>100_bases
ATAGAATAAATTATTGTGTGCTAGTTTTTACTAGCACATTTTAAATTTATAAGAATGTTTAACTAATATTTAAAATGATA
TAATATTAAGAAGAGGTAAA

Product: TrpR-like protein, YerC/YecD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MDQYKSKLESEEMDFLCEAFLSLKTKEECYRFFDDICTINEIRALEQRIQVARMLRKKITYLEIAAATGASTATISRVNR
CLNYGSEGYKIVLNRIENK

Sequences:

>Translated_99_residues
MDQYKSKLESEEMDFLCEAFLSLKTKEECYRFFDDICTINEIRALEQRIQVARMLRKKITYLEIAAATGASTATISRVNR
CLNYGSEGYKIVLNRIENK
>Mature_99_residues
MDQYKSKLESEEMDFLCEAFLSLKTKEECYRFFDDICTINEIRALEQRIQVARMLRKKITYLEIAAATGASTATISRVNR
CLNYGSEGYKIVLNRIENK

Specific function: Unknown

COG id: COG4496

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000831
- InterPro:   IPR010921
- InterPro:   IPR013368 [H]

Pfam domain/function: PF01371 Trp_repressor [H]

EC number: NA

Molecular weight: Translated: 11542; Mature: 11542

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQYKSKLESEEMDFLCEAFLSLKTKEECYRFFDDICTINEIRALEQRIQVARMLRKKIT
CCHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLEIAAATGASTATISRVNRCLNYGSEGYKIVLNRIENK
HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MDQYKSKLESEEMDFLCEAFLSLKTKEECYRFFDDICTINEIRALEQRIQVARMLRKKIT
CCHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLEIAAATGASTATISRVNRCLNYGSEGYKIVLNRIENK
HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969499; 9701819; 9384377 [H]