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The map label for this gene is hgdC_2 [H]

Identifier: 226950670

GI number: 226950670

Start: 3693568

End: 3694326

Strand: Reverse

Name: hgdC_2 [H]

Synonym: CLM_3655

Alternate gene names: 226950670

Gene position: 3694326-3693568 (Counterclockwise)

Preceding gene: 226950671

Following gene: 226950669

Centisome position: 88.91

GC content: 32.41

Gene sequence:

>759_bases
ATGTTTTACATAGGTATAGATATAGGATCTACTGCATCTAAGGTTTGTGTCTTTGAAAATGACAATATAAAGGATGTATT
TGTATTGCCAACGGGTTGGAGTAGTGTTAAAACTGCAGAGGAAATTAAATATAAGTTAAAAGAAATAGGAGCAGATAAAG
AAAATTCTAAAATAGTTGCTACAGGTTATGGACGAGTTTCTGTTCCTTATGCGGATAAAACTATAACAGAGATAACCTGC
CATGGCAAAGGAGCTTATTATTTATTTAAGAAGGATTGCACAGTTATAGATATAGGAGGTCAAGATACAAAAGTCATAAC
AGTGGAAGATGGCAATGTTACTAATTTTACTATGAATGATAAATGTGCGGCAGGAACAGGAAGATTTTTAGAACTAATGG
CAAATACATTGGGTTTTGATATAGAAGAAATGTGTGAAAGAGCAAAAAATGGAGAAAATGTAACTATAAGCTCTATGTGC
ACAGTATTTGCAGAATCTGAAGTTATAAGCTTAATAGGCAGTGGTAAGAAAAGAGAAGATATAGCTTACGGAGTATTAGA
TTCTATAACTGGAAAAGTAAAATCTTTATGTCAAAAACATTCAGATAATGGACAATATTTTTTAACTGGAGGGTTAAGTG
AAAATAATTACATATTAGAGAGATTATCAGAAAAATTAGGCTCAGAAGTAAAGGCTCATGAACTTGGAAGATATGCTGGA
GCTATAGGAGCAGCCCTGATGTCACAAAGATTAAAATAA

Upstream 100 bases:

>100_bases
AAATTAATAGAAGATAATGAAATAAAAACTTCGGGATTACATTCATTAACTAAAATTATAAAAAATTTTTATGCTTAATT
TATAGAAAAGGTGGGGTTAA

Downstream 100 bases:

>100_bases
TAGTTGACTTAGTTTAATTTCTGTGCTAATATTACCAATAAAGATTAATAAAATTTTTATAAGACCTTTAAAATTAGTCC
TGTGAGACTAAAAAGGAAGA

Product: (R)-hydroxyglutaryl-CoA dehydratase activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MFYIGIDIGSTASKVCVFENDNIKDVFVLPTGWSSVKTAEEIKYKLKEIGADKENSKIVATGYGRVSVPYADKTITEITC
HGKGAYYLFKKDCTVIDIGGQDTKVITVEDGNVTNFTMNDKCAAGTGRFLELMANTLGFDIEEMCERAKNGENVTISSMC
TVFAESEVISLIGSGKKREDIAYGVLDSITGKVKSLCQKHSDNGQYFLTGGLSENNYILERLSEKLGSEVKAHELGRYAG
AIGAALMSQRLK

Sequences:

>Translated_252_residues
MFYIGIDIGSTASKVCVFENDNIKDVFVLPTGWSSVKTAEEIKYKLKEIGADKENSKIVATGYGRVSVPYADKTITEITC
HGKGAYYLFKKDCTVIDIGGQDTKVITVEDGNVTNFTMNDKCAAGTGRFLELMANTLGFDIEEMCERAKNGENVTISSMC
TVFAESEVISLIGSGKKREDIAYGVLDSITGKVKSLCQKHSDNGQYFLTGGLSENNYILERLSEKLGSEVKAHELGRYAG
AIGAALMSQRLK
>Mature_252_residues
MFYIGIDIGSTASKVCVFENDNIKDVFVLPTGWSSVKTAEEIKYKLKEIGADKENSKIVATGYGRVSVPYADKTITEITC
HGKGAYYLFKKDCTVIDIGGQDTKVITVEDGNVTNFTMNDKCAAGTGRFLELMANTLGFDIEEMCERAKNGENVTISSMC
TVFAESEVISLIGSGKKREDIAYGVLDSITGKVKSLCQKHSDNGQYFLTGGLSENNYILERLSEKLGSEVKAHELGRYAG
AIGAALMSQRLK

Specific function: Unknown

COG id: COG1924

COG function: function code I; Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082426, Length=252, Percent_Identity=41.6666666666667, Blast_Score=188, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002731
- InterPro:   IPR008275 [H]

Pfam domain/function: PF01869 BcrAD_BadFG [H]

EC number: NA

Molecular weight: Translated: 27443; Mature: 27443

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYIGIDIGSTASKVCVFENDNIKDVFVLPTGWSSVKTAEEIKYKLKEIGADKENSKIVA
CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
TGYGRVSVPYADKTITEITCHGKGAYYLFKKDCTVIDIGGQDTKVITVEDGNVTNFTMND
ECCCEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEEECCCEEEEEECC
KCAAGTGRFLELMANTLGFDIEEMCERAKNGENVTISSMCTVFAESEVISLIGSGKKRED
CCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHH
IAYGVLDSITGKVKSLCQKHSDNGQYFLTGGLSENNYILERLSEKLGSEVKAHELGRYAG
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AIGAALMSQRLK
HHHHHHHHHHCC
>Mature Secondary Structure
MFYIGIDIGSTASKVCVFENDNIKDVFVLPTGWSSVKTAEEIKYKLKEIGADKENSKIVA
CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
TGYGRVSVPYADKTITEITCHGKGAYYLFKKDCTVIDIGGQDTKVITVEDGNVTNFTMND
ECCCEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEEECCCEEEEEECC
KCAAGTGRFLELMANTLGFDIEEMCERAKNGENVTISSMCTVFAESEVISLIGSGKKRED
CCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHH
IAYGVLDSITGKVKSLCQKHSDNGQYFLTGGLSENNYILERLSEKLGSEVKAHELGRYAG
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AIGAALMSQRLK
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]