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The map label for this gene is rplY [H]

Identifier: 226950645

GI number: 226950645

Start: 3669339

End: 3669908

Strand: Reverse

Name: rplY [H]

Synonym: CLM_3629

Alternate gene names: 226950645

Gene position: 3669908-3669339 (Counterclockwise)

Preceding gene: 226950646

Following gene: 226950644

Centisome position: 88.32

GC content: 29.12

Gene sequence:

>570_bases
ATGAGTAGTGCTTCACTTACTGCTATAGTAAGAGAAAAGAGTGGTAAAAAATGCAGAAAAGAAGGGTTTGCACCAGGAAT
AATTTATGGAGCAGAAATGAAAGAATCTATAAAGGTTAAATTTGAAGTTCCTAGCCTTTTAAGATATTTAAATAAAGCTG
GTATTAATTCAAGATTATGGCTTAATATTGGCAATAAAAAAGAGTATGTATTAATTAAGGAAATACAAAAAGAACCAACA
ACAGGTGAGATACTTAATATAGATATGCAGGCTGTTTCACATGATGAAGTTATAAAAAATAGTATACCTGTAAAATTTGA
AGGAAAAGAACAATTAGAACATAAAGGATTTTTATTAGAAGAATTTACTCCATATATAGAGGTAGCTGGAAAAGTAGGTA
TACTTCCAGAAATAATAGTGGTAAGTGTTGGGGAAAATGAACCAGGGGATAATATAAAAGTGTCAGATATAAAATTAGAT
GAGGATATAAAATTATATACAGATCCAGAAGAATTATTAGCTACAGTATCTTATAATGGAAAAGGTACAGTTGAAGAAAC
TGTAAGTTAA

Upstream 100 bases:

>100_bases
TGAAGTAATTTAAATGTAAATTATACTTATATATAATGATTATAATCTAATAAGAATATAATTACTAATGACTTTTGTAA
TGGGATGGGAGGAATTTTAT

Downstream 100 bases:

>100_bases
AATAAGAAGTTTTAAAGATTAGGTTTTCTAATTTATTTTATGAGATTTATATAGATTTGCTTTTATTTCTCGTAAATAGA
ATTAGAGAACCTAATTTTAT

Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLWLNIGNKKEYVLIKEIQKEPT
TGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLEEFTPYIEVAGKVGILPEIIVVSVGENEPGDNIKVSDIKLD
EDIKLYTDPEELLATVSYNGKGTVEETVS

Sequences:

>Translated_189_residues
MSSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLWLNIGNKKEYVLIKEIQKEPT
TGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLEEFTPYIEVAGKVGILPEIIVVSVGENEPGDNIKVSDIKLD
EDIKLYTDPEELLATVSYNGKGTVEETVS
>Mature_188_residues
SSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLWLNIGNKKEYVLIKEIQKEPTT
GEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLEEFTPYIEVAGKVGILPEIIVVSVGENEPGDNIKVSDIKLDE
DIKLYTDPEELLATVSYNGKGTVEETVS

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 21011; Mature: 20880

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLW
CCCCCEEEEEECCCCCHHHHCCCCCEEEECCCCCCEEEEEEECHHHHHHHHHCCCCCEEE
LNIGNKKEYVLIKEIQKEPTTGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLE
EEECCCCEEEEEEECCCCCCCCEEEEEEHHHCCHHHHHHCCCCEEECCHHHHHHCCEEHH
EFTPYIEVAGKVGILPEIIVVSVGENEPGDNIKVSDIKLDEDIKLYTDPEELLATVSYNG
HCCCHHEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEEEECHHHHEEEEECCC
KGTVEETVS
CCCHHCCCC
>Mature Secondary Structure 
SSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLW
CCCCEEEEEECCCCCHHHHCCCCCEEEECCCCCCEEEEEEECHHHHHHHHHCCCCCEEE
LNIGNKKEYVLIKEIQKEPTTGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLE
EEECCCCEEEEEEECCCCCCCCEEEEEEHHHCCHHHHHHCCCCEEECCHHHHHHCCEEHH
EFTPYIEVAGKVGILPEIIVVSVGENEPGDNIKVSDIKLDEDIKLYTDPEELLATVSYNG
HCCCHHEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEEEECHHHHEEEEECCC
KGTVEETVS
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]