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The map label for this gene is ylxY [H]

Identifier: 226950588

GI number: 226950588

Start: 3602731

End: 3603483

Strand: Reverse

Name: ylxY [H]

Synonym: CLM_3571

Alternate gene names: 226950588

Gene position: 3603483-3602731 (Counterclockwise)

Preceding gene: 226950590

Following gene: 226950587

Centisome position: 86.72

GC content: 26.56

Gene sequence:

>753_bases
ATGAAAGATAAATTTAAAAAAAGGATGGTATTTTCTTTACTACTCTTAGTTTTAGCTATAAGTATGTCTTTTTTTATTAA
TGGTAGAGGTCAAAAAGTTTCATTAAATATTAAGAAGAAGGTGCCTATATATAGAGTTGATACAAAAGAAAATAAAATAT
CTTTAACTTTTGATGTCAGCAGAGGGGACGAATATATAGATAAAATATTAGATATTTTAGATAAAAATAATGTTAAGGCT
ACCTTTTTTTTAGTGGGAGATTGGATAGAGCAAAAGCCAGAAAAAGTAAAAGAAATTCATGATAAAGGACATGAAATAGG
AAATCATTCTCATAGTCATCCTAATATGAGTAGAATATCTAAAGAAAGAATAATAAAAGATATTAACATTAATGATGCTA
GTATAAGAAAAATAACTGGAGAAGGTACTAAATTATTTAGATTTCCATCAGGAGAATATAATGCTGAAGCGATAGATACA
GTAAATGAAATAGGATTATATTCTGTGCAATGGGATGTAGATAGTATCGATTGGAAAGAAGAAGGAGCTGATTTAGAATA
TGAAAGAATTATAAAAAAGACTAAGCCTGGTTCCATATTGCTTTTCCATAATACAGCTAAATACACTCCAGATAATTTAC
CAAGAATAATTAAGGAATTAAAAGGAAATGGATTTGAATTTGTCAAAGTAGGAGATTTAATATATAAAGAAAATTATTAT
ATAGATTCAGCAGGAGTACAAAAAAAGAATTAA

Upstream 100 bases:

>100_bases
GTAAATTACTTTAATAAATAAAAAATAATTATTTAATGCATATAAAAAAATATATTTTATATAAATAAAAATGAAGAAAT
ATTTAGTTTGGAGGAATAAA

Downstream 100 bases:

>100_bases
AGTTTAAATTATAAAATGAAGGAATATTTAAAAAAATATAGAAAATGTAGTATAGGTGTAATATTTTTACTAAAGAGGGG
GGTTAACATACAAAAGATAT

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKDKFKKRMVFSLLLLVLAISMSFFINGRGQKVSLNIKKKVPIYRVDTKENKISLTFDVSRGDEYIDKILDILDKNNVKA
TFFLVGDWIEQKPEKVKEIHDKGHEIGNHSHSHPNMSRISKERIIKDININDASIRKITGEGTKLFRFPSGEYNAEAIDT
VNEIGLYSVQWDVDSIDWKEEGADLEYERIIKKTKPGSILLFHNTAKYTPDNLPRIIKELKGNGFEFVKVGDLIYKENYY
IDSAGVQKKN

Sequences:

>Translated_250_residues
MKDKFKKRMVFSLLLLVLAISMSFFINGRGQKVSLNIKKKVPIYRVDTKENKISLTFDVSRGDEYIDKILDILDKNNVKA
TFFLVGDWIEQKPEKVKEIHDKGHEIGNHSHSHPNMSRISKERIIKDININDASIRKITGEGTKLFRFPSGEYNAEAIDT
VNEIGLYSVQWDVDSIDWKEEGADLEYERIIKKTKPGSILLFHNTAKYTPDNLPRIIKELKGNGFEFVKVGDLIYKENYY
IDSAGVQKKN
>Mature_250_residues
MKDKFKKRMVFSLLLLVLAISMSFFINGRGQKVSLNIKKKVPIYRVDTKENKISLTFDVSRGDEYIDKILDILDKNNVKA
TFFLVGDWIEQKPEKVKEIHDKGHEIGNHSHSHPNMSRISKERIIKDININDASIRKITGEGTKLFRFPSGEYNAEAIDT
VNEIGLYSVQWDVDSIDWKEEGADLEYERIIKKTKPGSILLFHNTAKYTPDNLPRIIKELKGNGFEFVKVGDLIYKENYY
IDSAGVQKKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=129, Percent_Identity=32.5581395348837, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323338, Length=128, Percent_Identity=31.25, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014228
- InterPro:   IPR010916 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28828; Mature: 28828

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKFKKRMVFSLLLLVLAISMSFFINGRGQKVSLNIKKKVPIYRVDTKENKISLTFDVS
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEECCCCCEEEEEEEEC
RGDEYIDKILDILDKNNVKATFFLVGDWIEQKPEKVKEIHDKGHEIGNHSHSHPNMSRIS
CCHHHHHHHHHHHCCCCCEEEEEEEECHHHCCHHHHHHHHHCCHHCCCCCCCCCCHHHHH
KERIIKDININDASIRKITGEGTKLFRFPSGEYNAEAIDTVNEIGLYSVQWDVDSIDWKE
HHHHHHCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCC
EGADLEYERIIKKTKPGSILLFHNTAKYTPDNLPRIIKELKGNGFEFVKVGDLIYKENYY
CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCEEEECCEE
IDSAGVQKKN
ECCCCCCCCC
>Mature Secondary Structure
MKDKFKKRMVFSLLLLVLAISMSFFINGRGQKVSLNIKKKVPIYRVDTKENKISLTFDVS
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEECCCCCEEEEEEEEC
RGDEYIDKILDILDKNNVKATFFLVGDWIEQKPEKVKEIHDKGHEIGNHSHSHPNMSRIS
CCHHHHHHHHHHHCCCCCEEEEEEEECHHHCCHHHHHHHHHCCHHCCCCCCCCCCHHHHH
KERIIKDININDASIRKITGEGTKLFRFPSGEYNAEAIDTVNEIGLYSVQWDVDSIDWKE
HHHHHHCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCC
EGADLEYERIIKKTKPGSILLFHNTAKYTPDNLPRIIKELKGNGFEFVKVGDLIYKENYY
CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCEEEECCEE
IDSAGVQKKN
ECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 8825779 [H]