Click here to switch to the map view.

The map label for this gene is glcT [H]

Identifier: 226950167

GI number: 226950167

Start: 3120605

End: 3121432

Strand: Reverse

Name: glcT [H]

Synonym: CLM_3121

Alternate gene names: 226950167

Gene position: 3121432-3120605 (Counterclockwise)

Preceding gene: 226950168

Following gene: 226950166

Centisome position: 75.12

GC content: 27.54

Gene sequence:

>828_bases
TTGGAGAACTATACAGTAAAAAAGGTTCTTAATAATAATGTAATAATAGCAAATTGGCAAGAAGAGGATGCAATACTAGT
AGGGAAAGGTATAGGATTTAATTCTAAAAAGGGAGAAGTTCTTTCTAAGGATAAAATAGAAAAGGTATATATAAAGACCA
CCTCAAAAATGTCAGAAAACTATAATAAAGTTTTGGATAATATAGATAATAAAATAGTAGGTATTTCCGAAGAAATAATA
AATTTTTCAGAAAAGGCTTTAAATACAAAACTAAATGAAGGGGTTCATATTTCTTTGCCAGATCATATAAATTTTGCATT
AAGAAGAATAGAAAAGGGAATAAATATAGAAAATCCTTTTTTAGAGGAATTAGGCATAATTTATCCAAAGGAATATGAAA
TAGCTATGAAGGCTCTTAAGATGATAAATGAGAGATTAAAGGTTAACCTTCCAAAGGATGAAGCGGGATTTATATGCCTT
CATATAAGAGCAGGTATCACAAAACAGCAGGTTTCAGAATCCTTAGCTTATACTAAAAAAATAAGTAAAGTGATGGAACT
TATATCTAAACTAAAAGGAAAACCTTTAGATAAAAATTCCCTTTCTTATGTAAGAACTTTGACCCATTTAAATTTTATGA
TAGAAAGAGTTAAAGAAGATAAAACTATAAAAAATGAGTTATTAGATAGTATAAAAGAAGAGATGAAAAGTGAGTTTGGC
ATTGCCATTAAAGTAGCCATGCTTATAGAAAAATTATTTGAAATAAAAATACCAGAGGATGAAATAGGATATATCGCATT
ACATTTAAAAAGGATAGGGCAATATTAA

Upstream 100 bases:

>100_bases
GATTAATGAATTTTATAATTATAACATAGGTGTAGGAGCAGAAAGTTTAATATTATGTTAAATATAAGGTTGGAAAGAAA
AAGGTTTGGAGTGTTAAGAT

Downstream 100 bases:

>100_bases
GGTATATTAAATATATAAACTAAAAAACCTTGCTTTTGCAAGGTTTTTAAACTATAAGCAAGCTTAAAGGTGGTGTGTAA
AATTGAAAAATATTTTAACT

Product: transcriptional antiterminator, BglG family

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MENYTVKKVLNNNVIIANWQEEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSENYNKVLDNIDNKIVGISEEII
NFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPFLEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICL
HIRAGITKQQVSESLAYTKKISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFG
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY

Sequences:

>Translated_275_residues
MENYTVKKVLNNNVIIANWQEEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSENYNKVLDNIDNKIVGISEEII
NFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPFLEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICL
HIRAGITKQQVSESLAYTKKISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFG
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY
>Mature_275_residues
MENYTVKKVLNNNVIIANWQEEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSENYNKVLDNIDNKIVGISEEII
NFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPFLEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICL
HIRAGITKQQVSESLAYTKKISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFG
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=274, Percent_Identity=29.9270072992701, Blast_Score=156, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 31524; Mature: 31524

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENYTVKKVLNNNVIIANWQEEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSEN
CCCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHEEEEEHHHHHHHH
YNKVLDNIDNKIVGISEEIINFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPF
HHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCH
LEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICLHIRAGITKQQVSESLAYTKK
HHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
ISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENYTVKKVLNNNVIIANWQEEDAILVGKGIGFNSKKGEVLSKDKIEKVYIKTTSKMSEN
CCCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHEEEEEHHHHHHHH
YNKVLDNIDNKIVGISEEIINFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIENPF
HHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCH
LEELGIIYPKEYEIAMKALKMINERLKVNLPKDEAGFICLHIRAGITKQQVSESLAYTKK
HHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
ISKVMELISKLKGKPLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKSEFG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IAIKVAMLIEKLFEIKIPEDEIGYIALHLKRIGQY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]