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The map label for this gene is ywqD [H]

Identifier: 226950098

GI number: 226950098

Start: 3050281

End: 3050991

Strand: Reverse

Name: ywqD [H]

Synonym: CLM_3051

Alternate gene names: 226950098

Gene position: 3050991-3050281 (Counterclockwise)

Preceding gene: 226950099

Following gene: 226950097

Centisome position: 73.42

GC content: 30.52

Gene sequence:

>711_bases
TTGGATAGAAACTTAAACCTTATAACTATAAAAGAACCTAAGTCCCCAATATCCGAAGCTTATAGGACATTAAGAACTAA
TATACAATTTTCATCCTTTGATGAAAAAATAAGTGTAATTTTTGTGACTAGTTCTACTCCAGGAGAGGGTAAATCTACAA
CTTCAGCGAATTTAGCCATAACTATGGCACAAAATGGTTCAGAAACTATTTTAGTAGATTGTGATCTTAGAAAACCTAAT
GTACATAAGTTATTTAAGCTATCTAATACAAGGGGATTATCTAATTTACTGATAGAAGACAATGGTATGGATAAGGTAAT
ACAACAAAGCGGTATAGAAAATCTACATATTTTAACTTCAGGAATAAAGCCACCTAATCCCTCAGAGTTATTATCTTCTA
AAAAAATGAAAAAATTTATAGAGATGAGTAAAGAACATTATGATTATATAATATTAGATACCCCACCTGTAGGAGTGGTT
ACAGATGCTCAATTGGTATCCCAGTATTCAGATGGAGGGATATTAGTTACAGCTTCTGGACAGGTTGAAAGAGAATTAGC
TATAAGAGCAAAACAACTTTTACAAAAAGTCAATGCAAAAATACTAGGAGTAGTATTAAATAAGGTAGATACAAGCTCTG
GGAATGGATACAGATATTACAATTATTATTATGAAGAAGATGGAAAAAAGAAAAAAAGAAGCAAAAAATAA

Upstream 100 bases:

>100_bases
TGAGAATAAAGAAATAATTAGAAGTTATAACAAAATAGAAAGGAAAAAAAATATATTTAGCTTTCTAAAAAATATGATTT
AACATTGGAGTGATTACAAG

Downstream 100 bases:

>100_bases
AAGCTTAAGAAAGTGGTGTTATCACCACTTTAAAAAACAAAAAAATAAAGGTTAAATATGAACTTCAATAATAATAAAAA
ATATATAAAAATAATACTTG

Product: capsular exopolysaccharide family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MDRNLNLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGMDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

Sequences:

>Translated_236_residues
MDRNLNLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGMDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK
>Mature_236_residues
MDRNLNLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGMDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

Specific function: May be involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylates in vitro. Phosphorylates and activates in vitro two UDP-glucose dehydrogenases, YwqF and TuaD, as well as the DNA-binding proteins Ssb and SsbB [H]

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

Organism=Escherichia coli, GI1787216, Length=208, Percent_Identity=34.6153846153846, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87082032, Length=230, Percent_Identity=30.8695652173913, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 26307; Mature: 26307

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRNLNLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAI
CCCCCEEEEEECCCCHHHHHHHHHHHCCEECCCCCEEEEEEEECCCCCCCCCCCCCEEEE
TMAQNGSETILVDCDLRKPNVHKLFKLSNTRGLSNLLIEDNGMDKVIQQSGIENLHILTS
EEECCCCCEEEEEECCCCCCHHHHEEECCCCCCEEEEEECCCHHHHHHHCCCCEEEEEEC
GIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVVTDAQLVSQYSDGGILVTASG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHCCCCCEEEEECC
QVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK
CHHHHHHHHHHHHHHHHCHHHEEHHHHHCCCCCCCCEEEEEEEEECCCCHHHCCCC
>Mature Secondary Structure
MDRNLNLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAI
CCCCCEEEEEECCCCHHHHHHHHHHHCCEECCCCCEEEEEEEECCCCCCCCCCCCCEEEE
TMAQNGSETILVDCDLRKPNVHKLFKLSNTRGLSNLLIEDNGMDKVIQQSGIENLHILTS
EEECCCCCEEEEEECCCCCCHHHHEEECCCCCCEEEEEECCCHHHHHHHCCCCEEEEEEC
GIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVVTDAQLVSQYSDGGILVTASG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHCCCCCEEEEECC
QVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK
CHHHHHHHHHHHHHHHHCHHHEEHHHHHCCCCCCCCEEEEEEEEECCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]