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The map label for this gene is ydjZ [H]

Identifier: 226950019

GI number: 226950019

Start: 2972733

End: 2973470

Strand: Reverse

Name: ydjZ [H]

Synonym: CLM_2972

Alternate gene names: 226950019

Gene position: 2973470-2972733 (Counterclockwise)

Preceding gene: 226950020

Following gene: 226950018

Centisome position: 71.56

GC content: 31.84

Gene sequence:

>738_bases
ATGGATCAAAAGAAAAAGAAGAGTTTAATAATTAAATTAGGTTTTCTTTTAGGTATAATACTTTTGTATTTCTTAGTTCC
TGGTTTTAAAAATGGAGTAAATAAAATAGCTTCGATGCTTGCTAGATTAAATATAGAAGAGGTAAAAAATTACATAAAAT
CCTTTGGTGTTTGGGCACCACTTATATCTATGGCTCTTATGATGTTTCAATCTATTGCAGCTCCACTTCCAGCCTTCATA
ATAACTTTTGCTAATGCTTGGGTATTCGGATGGGCCTTTGGAGCTTTAATATCTTGGACAGGAGCTATGATGGGAGCTGC
TCTATGTTTCTATATAAGTAAATTTTATGGAAGACCTGTAGCAGAAAAGATAATTGGTAAAAAAGCATTAGATATGACAG
ATAAATTTTTTGATAAGTATGGTAAATATGCTATATTAATAGCTAGGCTTCTACCCTTTATATCCTTTGATGCTATAAGT
TATGCAGCTGGGCTTACAGAAATGTCTTTTTGGGCTTTCTTTTGGGCTACAGGAGTTGGACAACTTCCAGCTACTATAGT
TTACTCCATATTAGGACAAAACATAGGTAATATAGCAAAAATGGGTCTATGGATATTTTCAGGAGTAGTGGCTCTAATAG
TATTTGCGATAGCTGTTAAAAAGTATTTAATGGATAAAAAAAATAAAGAGGATAAAGCTAAGGTTAATAATGAAAATTTA
CAAGTCACAAAAGAATAG

Upstream 100 bases:

>100_bases
GTAGTATTGTTAGTTTTGCTATGTTTAGCTTCTTTTATTATGAAAAAGAAGCTATCCTTTAATAAATTACAGAAAAATAT
AATTAAGAAAGGGGATAGTT

Downstream 100 bases:

>100_bases
TAGAATAAGAGACATAGTCTTTAAAGGGAATATGTCTCTTATTCTATACTACTTTAAAGGCTTAGATGGTTATTTAGCCT
TAATTTAATAAATAATAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDQKKKKSLIIKLGFLLGIILLYFLVPGFKNGVNKIASMLARLNIEEVKNYIKSFGVWAPLISMALMMFQSIAAPLPAFI
ITFANAWVFGWAFGALISWTGAMMGAALCFYISKFYGRPVAEKIIGKKALDMTDKFFDKYGKYAILIARLLPFISFDAIS
YAAGLTEMSFWAFFWATGVGQLPATIVYSILGQNIGNIAKMGLWIFSGVVALIVFAIAVKKYLMDKKNKEDKAKVNNENL
QVTKE

Sequences:

>Translated_245_residues
MDQKKKKSLIIKLGFLLGIILLYFLVPGFKNGVNKIASMLARLNIEEVKNYIKSFGVWAPLISMALMMFQSIAAPLPAFI
ITFANAWVFGWAFGALISWTGAMMGAALCFYISKFYGRPVAEKIIGKKALDMTDKFFDKYGKYAILIARLLPFISFDAIS
YAAGLTEMSFWAFFWATGVGQLPATIVYSILGQNIGNIAKMGLWIFSGVVALIVFAIAVKKYLMDKKNKEDKAKVNNENL
QVTKE
>Mature_245_residues
MDQKKKKSLIIKLGFLLGIILLYFLVPGFKNGVNKIASMLARLNIEEVKNYIKSFGVWAPLISMALMMFQSIAAPLPAFI
ITFANAWVFGWAFGALISWTGAMMGAALCFYISKFYGRPVAEKIIGKKALDMTDKFFDKYGKYAILIARLLPFISFDAIS
YAAGLTEMSFWAFFWATGVGQLPATIVYSILGQNIGNIAKMGLWIFSGVVALIVFAIAVKKYLMDKKNKEDKAKVNNENL
QVTKE

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI1788049, Length=221, Percent_Identity=47.0588235294118, Blast_Score=193, Evalue=9e-51,
Organism=Escherichia coli, GI87081964, Length=123, Percent_Identity=26.0162601626016, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 27295; Mature: 27295

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEECC
>Mature Secondary Structure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EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]