Click here to switch to the map view.

The map label for this gene is 226950004

Identifier: 226950004

GI number: 226950004

Start: 2961931

End: 2962587

Strand: Reverse

Name: 226950004

Synonym: CLM_2957

Alternate gene names: NA

Gene position: 2962587-2961931 (Counterclockwise)

Preceding gene: 226950005

Following gene: 226950003

Centisome position: 71.3

GC content: 25.11

Gene sequence:

>657_bases
TTGATAGGATTAGAATATGTTTTAAGTTTATATAATCTTACACAACAAGAATTAGCCGAGGAATTAGGTATAAAAAAACA
AAATATAAGTCAGTGGGTTAAAGGTAGTAGAAAAATACCTAAAAAATATTTAACTTATTTAAGTGAGAAGTTTAAAATTC
CTGTTCCGTATTTCAGCATGGAAATTAAAAAAAGTGACGAATTAAAGATTAAAATAATTAAATTGAAAAATGAAAACCCT
TCTCAAAAAGTTAATAGAGTTTTTGATCCAATTAGACGTGAATTTAAAGAAGAAGTTTACGAACAATCTGTTGAAAATGA
GATTACTTTATTAAACATAGAAATTGAGAGGCAAGAACTTTTGGAAATAATTTATAAAATAATTAACTTTGATTTTGATA
ACAAAACAGATCATATTAAAGAATACGCTAACGAAAATAGAAAAATAATTGGAGTGTTTGATTATATAACAACTATTTTA
GAAAGTAAAAAAGTAGAATCAGATTTCTTAATGGAAATTCTAAATGCAGTAGTATTATCATTTAAAATTGAGGAAGGATT
CGATATGAGACCATTAGTAAGAGATTTGGAAATGATTTTTCAGTGTTATGAGTTTGATGAGAAGCGAGGTTGTTGTATAG
AAAAACATAATGAATAG

Upstream 100 bases:

>100_bases
AAAGTTTTGTAAAAAAATTCTCAGTTTGCTTGACAGTAAAACAAAAATAGCGTATTATATAAAATATAAGCTTAACAATC
AAGCAAAAGAGGTGGTTTAT

Downstream 100 bases:

>100_bases
AGTGTTTTAAAGGGACACTCTTGATATAAATATTCTAATAATATATAAAAACGCAGAAAATACAAATAAACCTAACATTT
GTTAAGTTTTAGGGATATAT

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MIGLEYVLSLYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSMEIKKSDELKIKIIKLKNENP
SQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQELLEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTIL
ESKKVESDFLMEILNAVVLSFKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE

Sequences:

>Translated_218_residues
MIGLEYVLSLYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSMEIKKSDELKIKIIKLKNENP
SQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQELLEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTIL
ESKKVESDFLMEILNAVVLSFKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE
>Mature_218_residues
MIGLEYVLSLYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSMEIKKSDELKIKIIKLKNENP
SQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQELLEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTIL
ESKKVESDFLMEILNAVVLSFKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26083; Mature: 26083

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLEYVLSLYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSM
CCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHEE
EIKKSDELKIKIIKLKNENPSQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQEL
EECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHH
LEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTILESKKVESDFLMEILNAVVLS
HHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIGLEYVLSLYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSM
CCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHEE
EIKKSDELKIKIIKLKNENPSQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQEL
EECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHH
LEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTILESKKVESDFLMEILNAVVLS
HHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA