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The map label for this gene is ydaB [H]

Identifier: 226949939

GI number: 226949939

Start: 2901974

End: 2903512

Strand: Reverse

Name: ydaB [H]

Synonym: CLM_2891

Alternate gene names: 226949939

Gene position: 2903512-2901974 (Counterclockwise)

Preceding gene: 226949940

Following gene: 226949938

Centisome position: 69.88

GC content: 25.6

Gene sequence:

>1539_bases
ATGAAAGAAAAGGTTACTTTTGGAGATATATATACTGTAATTTTTCAAGAGGAAGATAGTAATAAAGAATGTATAATAGT
CTACAATGATGAAAAAAGGATTGTGTACAATAAAAAACAATATCGAATATTAATTAATAAAATGAGTAGATTTTTAAAAC
TTCTTTATCCATATATAAAAGTCGGAGATTGGATTGGGTTGAAATATCGTAATAACTATCTGTATTATGCAGTAGTATTT
GGGGCTATGAAATTAGGATGGAATATATTATTACTTGGCAATAAAAGTGAAAGTAATAATAGGTATAGATATGAGATAGA
TGTGGAATTAATTGCTATTTTAGATAATAATATATTAGATAATTTTAATGATGAAGCTATTGATGTTCAATGTTTAAATA
GTAAATTTGAGAAAGATATTTGGTCTAGCAAAGTAGCATTTTTATCTTCTGGAACAACAGGAAAGCCACAAGTTATTATA
TATCATGCTTATGCAATTTTAAATCAAATAAAAAATGTTAAATATGAATTTTTAAGAAATGAGACGTTAGCAGATATTGT
GTATAAAACTGATAATTCGTACAGAAAAATAGTAACTTTTTTACCTATGAATCATATTTTAGGATTTTTATTACCTTTAA
TTTTCATCACTTTAGACTTAAAGGTTGTTTTTCTATCAGATCAAACACCATATGGTATTATTAAAGGAATAAGAAATGAG
AATGCTTTAGGAAGTTTTGGTGTGCCTATGGTTTGGAAATTAATAAAAAATATATTAAAGAGAAGGTATTCCCAAAATCG
TGAAGGTGTAGATAAATTATTAGGGGAAAATTTTAAAATTATTTTAAGTGGTGGCAGTAAAACAGATGCTTCCATTAGAA
ATAGTTATATTAGAGCAGGAATTGAATTTTTCGTTGGTTATGGATTAACAGAAACTGGTTTTTTATCTATAGGCAAAAGT
GATCTAAATGACTGTGAGTCTGAAGGAAAAGTTTATGATAATTATGAAATTAAAGTTTTAACTTCAGATGGAAGTATAAG
AAATGAAGGTACTGGAGAAATTATCGTAAAATCAGATTCTATATACGCTGCTTCTATAAAAGATAAAAAAGAGATTTGCC
CTGAATTAATTGAAGGCATGTATTATAGAACAGGGGATATCTTTGAGCTAAAAAATAGAAAACTTTATTTTAAAGGTAGG
ATGAAAAATATTATTGTAGATGAATCTGGAGAAAATATATATGCTGAAGAATTAGAAGAATTTTTTAAAGATATGAAGTC
TAAAGGGATTGTATATTTTATATCAGAATATAAAAATAGGGCTACTATGTTTATTGATAGGAATACACATAAACGCATTT
CAAAGGAATATATTATTGAGCTAATAAGAGAAAAAAATAAGAATCTTCCTATTTCAAAGAAAATATTAAAAGTATTATTT
TTAAATATAAATATTGAATTTACTCAAAAGGGAGATCCTATTCGTATTCTGAAAGAATACATGGATATTGGTGAAGTATT
TAATATAAAAGGAGTATGA

Upstream 100 bases:

>100_bases
GGAAGATTAAAGACTGGAAGTAAAACCTTAATGTCTGGTGTTGGAGTTGGAATTAATATTGCGACTATCGCAGTAATACT
TTAGTTATGTAGGTGAGTAT

Downstream 100 bases:

>100_bases
TAATTATGATAGATAATAATACAAAAATTGGGCTAAAAAAACAAATTAAAAAATATCTATCAGAGCTAATGGATGTTAAT
ACTGAAGATATTATGGATGA

Product: putative acyl-CoA synthetase

Products: AMP; diphosphate; acyl-CoA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MKEKVTFGDIYTVIFQEEDSNKECIIVYNDEKRIVYNKKQYRILINKMSRFLKLLYPYIKVGDWIGLKYRNNYLYYAVVF
GAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILDNFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVII
YHAYAILNQIKNVKYEFLRNETLADIVYKTDNSYRKIVTFLPMNHILGFLLPLIFITLDLKVVFLSDQTPYGIIKGIRNE
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDASIRNSYIRAGIEFFVGYGLTETGFLSIGKS
DLNDCESEGKVYDNYEIKVLTSDGSIRNEGTGEIIVKSDSIYAASIKDKKEICPELIEGMYYRTGDIFELKNRKLYFKGR
MKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
LNINIEFTQKGDPIRILKEYMDIGEVFNIKGV

Sequences:

>Translated_512_residues
MKEKVTFGDIYTVIFQEEDSNKECIIVYNDEKRIVYNKKQYRILINKMSRFLKLLYPYIKVGDWIGLKYRNNYLYYAVVF
GAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILDNFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVII
YHAYAILNQIKNVKYEFLRNETLADIVYKTDNSYRKIVTFLPMNHILGFLLPLIFITLDLKVVFLSDQTPYGIIKGIRNE
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDASIRNSYIRAGIEFFVGYGLTETGFLSIGKS
DLNDCESEGKVYDNYEIKVLTSDGSIRNEGTGEIIVKSDSIYAASIKDKKEICPELIEGMYYRTGDIFELKNRKLYFKGR
MKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
LNINIEFTQKGDPIRILKEYMDIGEVFNIKGV
>Mature_512_residues
MKEKVTFGDIYTVIFQEEDSNKECIIVYNDEKRIVYNKKQYRILINKMSRFLKLLYPYIKVGDWIGLKYRNNYLYYAVVF
GAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILDNFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVII
YHAYAILNQIKNVKYEFLRNETLADIVYKTDNSYRKIVTFLPMNHILGFLLPLIFITLDLKVVFLSDQTPYGIIKGIRNE
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDASIRNSYIRAGIEFFVGYGLTETGFLSIGKS
DLNDCESEGKVYDNYEIKVLTSDGSIRNEGTGEIIVKSDSIYAASIKDKKEICPELIEGMYYRTGDIFELKNRKLYFKGR
MKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
LNINIEFTQKGDPIRILKEYMDIGEVFNIKGV

Specific function: Unknown

COG id: COG1022

COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: 6.2.1.3

Molecular weight: Translated: 59489; Mature: 59489

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKVTFGDIYTVIFQEEDSNKECIIVYNDEKRIVYNKKQYRILINKMSRFLKLLYPYIK
CCCCEEECCEEEEEEEECCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
VGDWIGLKYRNNYLYYAVVFGAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILD
CCCEEEEEEECCEEEEHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCHHC
NFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVIIYHAYAILNQIKNVKYEFLRN
CCCCCEEEEEEHHHHHHHHHHHHHEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
ETLADIVYKTDNSYRKIVTFLPMNHILGFLLPLIFITLDLKVVFLSDQTPYGIIKGIRNE
CCCEEEEEECCCCHHHHEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHCCCCC
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDASIRNSYIRAG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
IEFFVGYGLTETGFLSIGKSDLNDCESEGKVYDNYEIKVLTSDGSIRNEGTGEIIVKSDS
HHHHEECCCCCCCEEEECCCHHHHHHHCCCEEECEEEEEEECCCCCCCCCCCEEEEECCC
IYAASIKDKKEICPELIEGMYYRTGDIFELKNRKLYFKGRMKNIIVDESGENIYAEELEE
EEEECCCCHHHHHHHHHHCCEECCCCEEEECCCEEEEECCCCEEEEECCCCEEHHHHHHH
FFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
HHHHHHHCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEE
LNINIEFTQKGDPIRILKEYMDIGEVFNIKGV
EEEEEEEECCCCHHHHHHHHHCCCCEEECCCC
>Mature Secondary Structure
MKEKVTFGDIYTVIFQEEDSNKECIIVYNDEKRIVYNKKQYRILINKMSRFLKLLYPYIK
CCCCEEECCEEEEEEEECCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
VGDWIGLKYRNNYLYYAVVFGAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILD
CCCEEEEEEECCEEEEHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCHHC
NFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVIIYHAYAILNQIKNVKYEFLRN
CCCCCEEEEEEHHHHHHHHHHHHHEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
ETLADIVYKTDNSYRKIVTFLPMNHILGFLLPLIFITLDLKVVFLSDQTPYGIIKGIRNE
CCCEEEEEECCCCHHHHEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHCCCCC
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDASIRNSYIRAG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
IEFFVGYGLTETGFLSIGKSDLNDCESEGKVYDNYEIKVLTSDGSIRNEGTGEIIVKSDS
HHHHEECCCCCCCEEEECCCHHHHHHHCCCEEECEEEEEEECCCCCCCCCCCEEEEECCC
IYAASIKDKKEICPELIEGMYYRTGDIFELKNRKLYFKGRMKNIIVDESGENIYAEELEE
EEEECCCCHHHHHHHHHHCCEECCCCEEEECCCEEEEECCCCEEEEECCCCEEHHHHHHH
FFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
HHHHHHHCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEE
LNINIEFTQKGDPIRILKEYMDIGEVFNIKGV
EEEEEEEECCCCHHHHHHHHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; long-chain carboxylic acid; CoA

Specific reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]