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The map label for this gene is yrrO [H]

Identifier: 226949910

GI number: 226949910

Start: 2865478

End: 2866704

Strand: Reverse

Name: yrrO [H]

Synonym: CLM_2862

Alternate gene names: 226949910

Gene position: 2866704-2865478 (Counterclockwise)

Preceding gene: 226949911

Following gene: 226949909

Centisome position: 68.99

GC content: 30.32

Gene sequence:

>1227_bases
ATGCTTAATATGAAAAAACCAGAACTTTTAGCTCCAGCAGGGAATTTAGAAAAATTAAAGACAGCTATAAACTTTGGAGC
AGATGCGGTTTATTTAGGTGGTAGCAAATTGAATTTAAGAGCATTTGCGGACAATTTCACAGATGATGAGCTTCAAGAGG
GTATAAAATATGCTCATGATAGAGGTAGAAAGGTTCATGTTACAATAAATGTTTTTCCACGTAATGAAGATTTTAATGGA
TTAGAAGAGTATTTGAAAAAATTATATGAATTTAATGTAGATGCCATAATAGTTTCAGATCCAGGAATTATTATGACTGC
AAGGGAAACAGTACCCAATTTGGAGATACATTTAAGCACTCAAGCAAATACAGTTAATTTTAAAACTATAAACTTTTGGT
ATAAACAAGGTGTTAAAAGAACTGTATTAGCAAGAGAATTAACTTTAGAAGAAATAAAAACCATAAGAGAAAAAATAGAA
AAAGATTGTCAATTAGAAGCCTTTGTTCATGGTTCTATGTGCATGTCTTATTCCGGTAGATGTCTTCTATCTAACTATAT
GACAGGAAGAGATTCTAATAGAGGAGCTTGTGCACAACCTTGTAGATATAAATATTATTTAATGGAAGAAAAAAGAGAAG
GGGAGTATTTCCCGATTTTAGAAGATGATAAAGGAACATACATAATGAATTCAAAGGATATGTGTATGATAGAGCACATA
CCAGAGTTAGTTCAAAGTGGCATAGATTCCTTTAAAATAGAAGGAAGAATGAAAAGTTCCTTCTATGTGGCTACAGTAGT
TAAAGCCTATAGAGAAGCTATAGATGCTTATTTTGAGGACCCAGAAAATTATACTTTTAAAGAAAAATGGATGGATTATT
TAAAAAAAGCTAGCCATAGAGCATATTTTACAGGTTTTTATTTTAATGATCCTGATAAGCAATTGCATGAATCTTCTTCA
TATATTAGAACTTGTGATATTGTAGGCATTGTAAAAGAATTTAGCGAAGAGACTATGGAAGCTATAGTAGAGCAAAGAAA
TAAAGTACTAGATGGAGATGAATTAGAAGTTTTAAGACCTGAAGGTCCTATATTTAAAATAAATATAGCCAACATGAGAG
ATAAGAATGATAAAAAAATAGATTCCGCTCCTTCAGCTCAAATGGTATTTAAAGTTAACACGGATAAAAGCTTAAAAGAA
AATGATATACTTATAAAAAATAAATAA

Upstream 100 bases:

>100_bases
ATGAGAAAATATATGAATATGATAAGTGATAAGGATAATTTCATAACTTCAATTATACCTATGGGAGATGGAATTGCTAT
AACTAAGAGGAGGAATGAGG

Downstream 100 bases:

>100_bases
TATATAAAAACATATTTATATATTAGTGTGAAGAAAGAAAATTAGCCAAGAATACACCATTAATTTGTTATAATTTTAAA
TTTTATTATGCATAAAATGA

Product: peptidase, U32 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHDRGRKVHVTINVFPRNEDFNG
LEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLSTQANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIE
KDCQLEAFVHGSMCMSYSGRCLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDPENYTFKEKWMDYLKKASHRAYFTGFYFNDPDKQLHESSS
YIRTCDIVGIVKEFSEETMEAIVEQRNKVLDGDELEVLRPEGPIFKINIANMRDKNDKKIDSAPSAQMVFKVNTDKSLKE
NDILIKNK

Sequences:

>Translated_408_residues
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHDRGRKVHVTINVFPRNEDFNG
LEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLSTQANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIE
KDCQLEAFVHGSMCMSYSGRCLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDPENYTFKEKWMDYLKKASHRAYFTGFYFNDPDKQLHESSS
YIRTCDIVGIVKEFSEETMEAIVEQRNKVLDGDELEVLRPEGPIFKINIANMRDKNDKKIDSAPSAQMVFKVNTDKSLKE
NDILIKNK
>Mature_408_residues
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHDRGRKVHVTINVFPRNEDFNG
LEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLSTQANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIE
KDCQLEAFVHGSMCMSYSGRCLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDPENYTFKEKWMDYLKKASHRAYFTGFYFNDPDKQLHESSS
YIRTCDIVGIVKEFSEETMEAIVEQRNKVLDGDELEVLRPEGPIFKINIANMRDKNDKKIDSAPSAQMVFKVNTDKSLKE
NDILIKNK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=446, Percent_Identity=36.5470852017937, Blast_Score=269, Evalue=3e-73,
Organism=Escherichia coli, GI1789548, Length=320, Percent_Identity=35.625, Blast_Score=188, Evalue=7e-49,
Organism=Escherichia coli, GI87081910, Length=279, Percent_Identity=35.4838709677419, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47106; Mature: 47106

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHD
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHH
RGRKVHVTINVFPRNEDFNGLEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLST
CCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCEEEEEEC
QANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIEKDCQLEAFVHGSMCMSYSGR
CCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCC
CLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEECCCCCCHHHHH
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDPENYTFKEKWMDYLKKASHR
HHHHHCCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
AYFTGFYFNDPDKQLHESSSYIRTCDIVGIVKEFSEETMEAIVEQRNKVLDGDELEVLRP
EEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
EGPIFKINIANMRDKNDKKIDSAPSAQMVFKVNTDKSLKENDILIKNK
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECC
>Mature Secondary Structure
MLNMKKPELLAPAGNLEKLKTAINFGADAVYLGGSKLNLRAFADNFTDDELQEGIKYAHD
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHH
RGRKVHVTINVFPRNEDFNGLEEYLKKLYEFNVDAIIVSDPGIIMTARETVPNLEIHLST
CCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCEEEEEEC
QANTVNFKTINFWYKQGVKRTVLARELTLEEIKTIREKIEKDCQLEAFVHGSMCMSYSGR
CCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCC
CLLSNYMTGRDSNRGACAQPCRYKYYLMEEKREGEYFPILEDDKGTYIMNSKDMCMIEHI
EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEECCCCCCHHHHH
PELVQSGIDSFKIEGRMKSSFYVATVVKAYREAIDAYFEDPENYTFKEKWMDYLKKASHR
HHHHHCCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
AYFTGFYFNDPDKQLHESSSYIRTCDIVGIVKEFSEETMEAIVEQRNKVLDGDELEVLRP
EEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
EGPIFKINIANMRDKNDKKIDSAPSAQMVFKVNTDKSLKENDILIKNK
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]