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The map label for this gene is prdB [H]

Identifier: 226949816

GI number: 226949816

Start: 2769616

End: 2770335

Strand: Reverse

Name: prdB [H]

Synonym: CLM_2757

Alternate gene names: 226949816

Gene position: 2770335-2769616 (Counterclockwise)

Preceding gene: 226949817

Following gene: 226949815

Centisome position: 66.67

GC content: 37.36

Gene sequence:

>720_bases
ATGAATATTGTAAAGGGATTACAATCAGAAATATTTGTTCCTATAACTCCTAACCCAGTATGGGCGCCAGTTACAATGGA
ACTAAAAGATATGACAGTAGCATTAGCTACAGCAGCAGGAGTTCACTTAAAATCAGATAAAAGATTTAATTTAGCAGGTG
ACTTCACATACAGATTAGTACCAGGAGATGCGAAAACATCAGATATGATGGTATCTCACGGTGGATATGATAACGGAGAC
GTTAACAAAGATATAAATGCCATGTTCCCAATAGATAGATTAAGAGAATTAGCAGATGCAGGTTTTATAAAAGCTGTTGC
TAAAACTCATATAGGATTCATGGGCGGTGGCGGAAACCAACAAAAATTCAGAGAAGAAACAGGCCCAGAAGTTGCTAAAA
TCTTAAAAGAAGAAGGCGTAGACGCTGTATTGATGACTGCTGGATGAGGAACTTGTCATAGATCTGCAGTTATAGTGCAG
AGAGCGATTGAAGAAATAGGAATTCCTACAATAATAATAGCTGCTCTTCCACCAGTTGTTAAACAATCTGGTACACCAAG
AGCGGTTGCACCAAGAGTTCCAATGGGTGCTAATGCGGGAGAACCTAACAATGTAGAAATGCAAACAGCAATAGTAAAAG
AAACATTAGAACAATTAATTAAGATTCCTTCAGCAGGAAAAGTTGTTCCATTACCATACGAATATATAGCAAAAGTTTAA

Upstream 100 bases:

>100_bases
ATGAAAAATATGTAAGTAATTTAGAAATTCAAAAAAGACGTGGTCTAAATCCTGACGAAAGACATAAATAAATTTATAAA
TTGAAGGGAAGGTTACTAGA

Downstream 100 bases:

>100_bases
TAATTAAAGAAGAGCTCTACTTTGCTAAGTAGAGCTCTTTTAAAAGAACAACAAATTATCCAATTGAATTTGAAATATGT
AAATGGAAATAAATCAAAAA

Product: D-proline reductase subunit gamma PrdB

Products: NA

Alternate protein names: D-proline reductase 26 kDa subunit [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNIVKGLQSEIFVPITPNPVWAPVTMELKDMTVALATAAGVHLKSDKRFNLAGDFTYRLVPGDAKTSDMMVSHGGYDNGD
VNKDINAMFPIDRLRELADAGFIKAVAKTHIGFMGGGGNQQKFREETGPEVAKILKEEGVDAVLMTAGUGTCHRSAVIVQ
RAIEEIGIPTIIIAALPPVVKQSGTPRAVAPRVPMGANAGEPNNVEMQTAIVKETLEQLIKIPSAGKVVPLPYEYIAKV

Sequences:

>Translated_239_residues
MNIVKGLQSEIFVPITPNPVWAPVTMELKDMTVALATAAGVHLKSDKRFNLAGDFTYRLVPGDAKTSDMMVSHGGYDNGD
VNKDINAMFPIDRLRELADAGFIKAVAKTHIGFMGGGGNQQKFREETGPEVAKILKEEGVDAVLMTAG*GTCHRSAVIVQ
RAIEEIGIPTIIIAALPPVVKQSGTPRAVAPRVPMGANAGEPNNVEMQTAIVKETLEQLIKIPSAGKVVPLPYEYIAKV
>Mature_239_residues
MNIVKGLQSEIFVPITPNPVWAPVTMELKDMTVALATAAGVHLKSDKRFNLAGDFTYRLVPGDAKTSDMMVSHGGYDNGD
VNKDINAMFPIDRLRELADAGFIKAVAKTHIGFMGGGGNQQKFREETGPEVAKILKEEGVDAVLMTAG*GTCHRSAVIVQ
RAIEEIGIPTIIIAALPPVVKQSGTPRAVAPRVPMGANAGEPNNVEMQTAIVKETLEQLIKIPSAGKVVPLPYEYIAKV

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022787 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 25423; Mature: 25423

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVKGLQSEIFVPITPNPVWAPVTMELKDMTVALATAAGVHLKSDKRFNLAGDFTYRLV
CCHHHCCCCCEEEEECCCCCEEEEEEEHHHHEEEEHHHCCEEECCCCCEEEECCEEEEEE
PGDAKTSDMMVSHGGYDNGDVNKDINAMFPIDRLRELADAGFIKAVAKTHIGFMGGGGNQ
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCH
QKFREETGPEVAKILKEEGVDAVLMTAGGTCHRSAVIVQRAIEEIGIPTIIIAALPPVVK
HHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
QSGTPRAVAPRVPMGANAGEPNNVEMQTAIVKETLEQLIKIPSAGKVVPLPYEYIAKV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCC
>Mature Secondary Structure
MNIVKGLQSEIFVPITPNPVWAPVTMELKDMTVALATAAGVHLKSDKRFNLAGDFTYRLV
CCHHHCCCCCEEEEECCCCCEEEEEEEHHHHEEEEHHHCCEEECCCCCEEEECCEEEEEE
PGDAKTSDMMVSHGGYDNGDVNKDINAMFPIDRLRELADAGFIKAVAKTHIGFMGGGGNQ
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCH
QKFREETGPEVAKILKEEGVDAVLMTAGGTCHRSAVIVQRAIEEIGIPTIIIAALPPVVK
HHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
QSGTPRAVAPRVPMGANAGEPNNVEMQTAIVKETLEQLIKIPSAGKVVPLPYEYIAKV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]