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The map label for this gene is rpoD [C]

Identifier: 226949740

GI number: 226949740

Start: 2692923

End: 2693474

Strand: Reverse

Name: rpoD [C]

Synonym: CLM_2680

Alternate gene names: 226949740

Gene position: 2693474-2692923 (Counterclockwise)

Preceding gene: 226949741

Following gene: 226949739

Centisome position: 64.82

GC content: 30.25

Gene sequence:

>552_bases
ATGATTAATGCTGAGGAACATCTAAATTTAGTACACAGCATTGCTAGCAAAAGATATAGCCAATTTAAACACAAGTACAC
ATATGAAGAGTTATTTCAAGAAGGATGCTTAGGTCTTATGAAAGCTGTAAATAGATTTGATACTAGTAGAGGGATAAAGT
TTAGCACATATGCCTACCCTTATGTAGATGGAGCAATCTTGATTATGGCAAGAGATGATAAATGGTATGGTAAAAATAGA
AAGGAGAGATTTGAGAAAAGTGCTCCATATAGTTTAGATGCAGCCATAAAAGGGCTCGAAAATGAAATGCCATATATAAA
TTTAATCGGAAATGATGACTTTAACTTTGAAAAGATAGAAGTAAAAATGTTAGTAGATGAGTTACCAAGTGATTTAAAAG
ATATTGTAAATATGATATACATTGAAGGCTTTACACAAACAGAAATTGCCAAGATAATCGGTTGTTCTCAAATTAGTATT
AGCAGATTAAAAAAAGAAGCTTTAGATTATTTAAGATTTCAAGTAAGTAGTATAAAAAAAGAGATGGCTTAA

Upstream 100 bases:

>100_bases
TTTACAAGCATAGAATCCAGAACAAAATATTTTAAACATTATTGTTGTAACAACTATAAGAAATGCAATAGATACAAAGG
GATAAGGAGGTGAGGTATAA

Downstream 100 bases:

>100_bases
GCCACCAATAAATTTAATTAAAAAACCTAAATACATTATAACAGAAAGGAGATAGATCTGTAAATGTTTGTAGCTAGAAT
TAAGCTTCTGAAAGAAGAAA

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma; RNA Polymerase; RNA Polymerase Sigma Factor; FliA/WhiG Subfamily RNA Polymerase Sigma-28 Subunit; RNA Polymerase Sigma Subunit RpoX/SigF; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-K Factor; Sporulation Sigma Factor SigK; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MINAEEHLNLVHSIASKRYSQFKHKYTYEELFQEGCLGLMKAVNRFDTSRGIKFSTYAYPYVDGAILIMARDDKWYGKNR
KERFEKSAPYSLDAAIKGLENEMPYINLIGNDDFNFEKIEVKMLVDELPSDLKDIVNMIYIEGFTQTEIAKIIGCSQISI
SRLKKEALDYLRFQVSSIKKEMA

Sequences:

>Translated_183_residues
MINAEEHLNLVHSIASKRYSQFKHKYTYEELFQEGCLGLMKAVNRFDTSRGIKFSTYAYPYVDGAILIMARDDKWYGKNR
KERFEKSAPYSLDAAIKGLENEMPYINLIGNDDFNFEKIEVKMLVDELPSDLKDIVNMIYIEGFTQTEIAKIIGCSQISI
SRLKKEALDYLRFQVSSIKKEMA
>Mature_183_residues
MINAEEHLNLVHSIASKRYSQFKHKYTYEELFQEGCLGLMKAVNRFDTSRGIKFSTYAYPYVDGAILIMARDDKWYGKNR
KERFEKSAPYSLDAAIKGLENEMPYINLIGNDDFNFEKIEVKMLVDELPSDLKDIVNMIYIEGFTQTEIAKIIGCSQISI
SRLKKEALDYLRFQVSSIKKEMA

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Is The Primary Sigma Factor Of This Bacterium. [C]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 700 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21237; Mature: 21237

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINAEEHLNLVHSIASKRYSQFKHKYTYEELFQEGCLGLMKAVNRFDTSRGIKFSTYAYP
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
YVDGAILIMARDDKWYGKNRKERFEKSAPYSLDAAIKGLENEMPYINLIGNDDFNFEKIE
CCCCEEEEEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHH
VKMLVDELPSDLKDIVNMIYIEGFTQTEIAKIIGCSQISISRLKKEALDYLRFQVSSIKK
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EMA
HCC
>Mature Secondary Structure
MINAEEHLNLVHSIASKRYSQFKHKYTYEELFQEGCLGLMKAVNRFDTSRGIKFSTYAYP
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
YVDGAILIMARDDKWYGKNRKERFEKSAPYSLDAAIKGLENEMPYINLIGNDDFNFEKIE
CCCCEEEEEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHH
VKMLVDELPSDLKDIVNMIYIEGFTQTEIAKIIGCSQISISRLKKEALDYLRFQVSSIKK
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EMA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA