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The map label for this gene is rhaR [H]

Identifier: 226949650

GI number: 226949650

Start: 2621331

End: 2622290

Strand: Reverse

Name: rhaR [H]

Synonym: CLM_2587

Alternate gene names: 226949650

Gene position: 2622290-2621331 (Counterclockwise)

Preceding gene: 226949651

Following gene: 226949649

Centisome position: 63.11

GC content: 29.06

Gene sequence:

>960_bases
TTGCATAAGCTGATGGAGGAAAATATATTTTTCGGTAATAATATTACTGTAATAAAGAGAGGGGAAAGTTGTACTGTATA
TAAAATGAAAGACATTACTGGTGAAGGTACTATGACTTGTTATAATGTGTTCCATGGCATTGATTTAATCTACAATGATT
TCCACTTGAAGAATTGTTTTTCAGAATTTATTCCAAAGGTAAAAATGATGGCAATAGATCATTGCAAAACAGGACGTATT
GAATGGGAATTTCAGAACGGTTCCTATATATATTTGCAAGAGGGAGATATGCAGATTAATGGAAGAAAACATCATAATGT
TGGATTTGGTTTTCCTTTAAATCATTATGAAGGAATCACGGTTGTTATATATATTGAAGAGGCATTAAAAACATTATTGA
CTATTTTTCAGGGATTTTCTATTGATTTGAAAGAATTATATAATAAATTCTGTTATAAAGAATCCCCTTTTATTATGCGT
GCAAAAGATTCAATTGAACATATTTTTTCTGAACTTTATAATGTACCTAATGAGATACGCACGAATTATTTTAAAATCAA
AATTCTAGAGTTGTTATTATTCTTAAGTGTAGTAGATGTAAAAGTAAAGGGAGAGGAACGGCCATATTTTACTAAAAAGC
AGGTTGAAACAGTAAAAAATATTATGAAATATATGACTGAGCATATAGATAAAAACTTTACATTAGAAGACTTGTCTAAT
AAATTTGAGATACCACTAACTTCTATGAAAAATTATTTTAAAGGGGTTTATGGAACATCAATATATTCTTATATGCGATC
TTACAGAATGCAAGTGGCTGCTTTAATGCTACGGGAAACAAATGAAAATATTACCGTCATTGCAGGTAAAGTAGGTTACG
AGAATTCTAGTAAATTTGCATCTGCATTTAAAAAAATTATGAATAGCTCACCTTCTGAATATCGAAGAAGGTTTATTTGA

Upstream 100 bases:

>100_bases
TCTTTTGAATGAGAATACTAGCTGCTTCCTAAATTGAATACTGAAGCATTTTTTATTTATTAAAGGAAATTATTAGAATA
TGAAAAGGGGATGACTGAAT

Downstream 100 bases:

>100_bases
ATAAAATACTGTTTGTAAATTGTCCTGAAGGTTATTTATTTTATTAATATATATATGTTTATAAGCTCCTAAGGGCGTTT
TTCTAGGTGTCCAAGTTAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MHKLMEENIFFGNNITVIKRGESCTVYKMKDITGEGTMTCYNVFHGIDLIYNDFHLKNCFSEFIPKVKMMAIDHCKTGRI
EWEFQNGSYIYLQEGDMQINGRKHHNVGFGFPLNHYEGITVVIYIEEALKTLLTIFQGFSIDLKELYNKFCYKESPFIMR
AKDSIEHIFSELYNVPNEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVETVKNIMKYMTEHIDKNFTLEDLSN
KFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFASAFKKIMNSSPSEYRRRFI

Sequences:

>Translated_319_residues
MHKLMEENIFFGNNITVIKRGESCTVYKMKDITGEGTMTCYNVFHGIDLIYNDFHLKNCFSEFIPKVKMMAIDHCKTGRI
EWEFQNGSYIYLQEGDMQINGRKHHNVGFGFPLNHYEGITVVIYIEEALKTLLTIFQGFSIDLKELYNKFCYKESPFIMR
AKDSIEHIFSELYNVPNEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVETVKNIMKYMTEHIDKNFTLEDLSN
KFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFASAFKKIMNSSPSEYRRRFI
>Mature_319_residues
MHKLMEENIFFGNNITVIKRGESCTVYKMKDITGEGTMTCYNVFHGIDLIYNDFHLKNCFSEFIPKVKMMAIDHCKTGRI
EWEFQNGSYIYLQEGDMQINGRKHHNVGFGFPLNHYEGITVVIYIEEALKTLLTIFQGFSIDLKELYNKFCYKESPFIMR
AKDSIEHIFSELYNVPNEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVETVKNIMKYMTEHIDKNFTLEDLSN
KFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFASAFKKIMNSSPSEYRRRFI

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37512; Mature: 37512

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKLMEENIFFGNNITVIKRGESCTVYKMKDITGEGTMTCYNVFHGIDLIYNDFHLKNCF
CCCHHHCCEEECCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHH
SEFIPKVKMMAIDHCKTGRIEWEFQNGSYIYLQEGDMQINGRKHHNVGFGFPLNHYEGIT
HHHCCHHHHHHHCCCCCCCEEEEEECCCEEEEECCCEEECCEEECCCCCCCCCCCCCCEE
VVIYIEEALKTLLTIFQGFSIDLKELYNKFCYKESPFIMRAKDSIEHIFSELYNVPNEIR
EEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHH
TNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVETVKNIMKYMTEHIDKNFTLEDLSN
HHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
KFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
SAFKKIMNSSPSEYRRRFI
HHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MHKLMEENIFFGNNITVIKRGESCTVYKMKDITGEGTMTCYNVFHGIDLIYNDFHLKNCF
CCCHHHCCEEECCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHH
SEFIPKVKMMAIDHCKTGRIEWEFQNGSYIYLQEGDMQINGRKHHNVGFGFPLNHYEGIT
HHHCCHHHHHHHCCCCCCCEEEEEECCCEEEEECCCEEECCEEECCCCCCCCCCCCCCEE
VVIYIEEALKTLLTIFQGFSIDLKELYNKFCYKESPFIMRAKDSIEHIFSELYNVPNEIR
EEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHH
TNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVETVKNIMKYMTEHIDKNFTLEDLSN
HHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
KFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
SAFKKIMNSSPSEYRRRFI
HHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA