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The map label for this gene is sodF [H]

Identifier: 226949647

GI number: 226949647

Start: 2616806

End: 2617402

Strand: Reverse

Name: sodF [H]

Synonym: CLM_2584

Alternate gene names: 226949647

Gene position: 2617402-2616806 (Counterclockwise)

Preceding gene: 226949648

Following gene: 226949646

Centisome position: 62.99

GC content: 30.32

Gene sequence:

>597_bases
ATGGCACATACTTTACCAAATTTAAATTATGATTACAATGCATTAGAACCTCATTATGATGAGCAGACTTTGAAAATACA
TCATGATATTCATCATAAAGCTTATGTAGATGGATTGAATAAAGCGGAACAAAAGCTTCAAGAAGCTAGAGAATCAGGAG
ATTTTGCATTAATAAAGCATTGGGAAAAGGAAATAGCATTTCATGGGTCAGGTCACATTTTACATACATTATTTTGGGAA
AATATGGTCCCTAATGGAAATCTAAATCCTGAGGGATCTGCAATTGAAAGAATAAAACAAGATTTTGGAGATTATGAAAA
ATTTAAAAAACAATTTACGGAAGCTGCTATAGCAGTAGAAGGTTCAGGCTGGACTATTTTAGCATGGAATCCTATGTTTC
AAAAATTAGTAATATTGCAGGCAGAAAAACATCAAAATTTAACTCAATGGGGAGTAGTTCCACTATTAATTTTAGATTTA
TGGGAACATGCATATTATTTAAAATATCAAAATAGAAGGGCAGAGTTTATTAATGCTTGGTGGAATATTGTAAATTGGGA
TATAGTAAATACTAGATATGATAATGCTATAAAATAA

Upstream 100 bases:

>100_bases
TTGTGATTTTATGCATACAAATATCATGAATATTTATTTAACAGTAATTAATACTAAGTAAGGATAGACAAAATAAAAAA
ATAAAAAGGAGATATTTAAA

Downstream 100 bases:

>100_bases
ATAATGTATTATTTAATTAAAAACACAATAAAAAATTTATTGTTTATTAAGTTCTTTATTCAGACTGTTCAAAAACCCCA
TGTAAATACATGGGGCTTTA

Product: Mn/Fe superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKHWEKEIAFHGSGHILHTLFWE
NMVPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVEGSGWTILAWNPMFQKLVILQAEKHQNLTQWGVVPLLILDL
WEHAYYLKYQNRRAEFINAWWNIVNWDIVNTRYDNAIK

Sequences:

>Translated_198_residues
MAHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKHWEKEIAFHGSGHILHTLFWE
NMVPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVEGSGWTILAWNPMFQKLVILQAEKHQNLTQWGVVPLLILDL
WEHAYYLKYQNRRAEFINAWWNIVNWDIVNTRYDNAIK
>Mature_197_residues
AHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKHWEKEIAFHGSGHILHTLFWEN
MVPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVEGSGWTILAWNPMFQKLVILQAEKHQNLTQWGVVPLLILDLW
EHAYYLKYQNRRAEFINAWWNIVNWDIVNTRYDNAIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=192, Percent_Identity=45.3125, Blast_Score=187, Evalue=5e-48,
Organism=Homo sapiens, GI67782305, Length=192, Percent_Identity=45.3125, Blast_Score=187, Evalue=5e-48,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=37.5, Blast_Score=136, Evalue=1e-32,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=36.8932038834951, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787946, Length=190, Percent_Identity=35.7894736842105, Blast_Score=119, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17506561, Length=195, Percent_Identity=38.974358974359, Blast_Score=158, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=38.659793814433, Blast_Score=153, Evalue=6e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=37.1287128712871, Blast_Score=134, Evalue=1e-32,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=40.1015228426396, Blast_Score=160, Evalue=4e-40,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23337; Mature: 23205

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKH
CCCCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
WEKEIAFHGSGHILHTLFWENMVPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVE
HHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHEEEE
GSGWTILAWNPMFQKLVILQAEKHQNLTQWGVVPLLILDLWEHAYYLKYQNRRAEFINAW
CCCEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHH
WNIVNWDIVNTRYDNAIK
HHHHCEEEECCCCCCCCC
>Mature Secondary Structure 
AHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKH
CCCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
WEKEIAFHGSGHILHTLFWENMVPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVE
HHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHEEEE
GSGWTILAWNPMFQKLVILQAEKHQNLTQWGVVPLLILDLWEHAYYLKYQNRRAEFINAW
CCCEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHH
WNIVNWDIVNTRYDNAIK
HHHHCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]