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The map label for this gene is yobU [H]

Identifier: 226948881

GI number: 226948881

Start: 1823509

End: 1824231

Strand: Reverse

Name: yobU [H]

Synonym: CLM_1790

Alternate gene names: 226948881

Gene position: 1824231-1823509 (Counterclockwise)

Preceding gene: 226948882

Following gene: 226948879

Centisome position: 43.9

GC content: 29.05

Gene sequence:

>723_bases
ATGGAACAAATATATTGTCAAAGTTGTGGAATGGCAATGAGTGAAGAGCTTTATAGTACTGAATTAAATAATAAAAAAAA
TCATGAATATTGTATTTATTGTTATGAAAATGGAGCTTTTAAGCATCCAAATTTAACTATAGAACAAATGATAGACGTAT
GTATACCTTTTATGAAAGAAAAAGGAATGAAGGAAGATGAAGCAATAGCATTAATGAAAAATTGTTTACCCAATTTAAAA
AGATGGAGAAAAGAAGATATAATTACTAAAGTAGTAGAAAAAGATAAAATGATAATAGTTGGAAAAGAAATAAGAACAAC
TAACAAAGACGGTGCCTTTATGGCTGTAATTCCAACGCTTTGGGAAGAATTTGAGAATAAAAAGCTTGGGGACAAAATAT
TAAATAAAGTAAATAAAGATGAGATTTTAGGTTTATATACTGATTATGAAAATAAAGAATTTGGCTTATATTCTTTTATG
GTGGGATTTCAAGTTACAGATACAAATTCTATATCAGAAGGTATGACATATAAAGTAATACCAGCTTCAAAATATTGTGT
AGTAACAGCTAAAGGCAAAATGCCCGATAAAATAGGAGCAGCTTGGGGATATATATGGAATGCAGGCCTTCAAAGAACCT
ATACAGGAGATTTTGAACTCTATGACAAAAGATATGATGGAACCGAAAATTCTGAAGTAGACATCTATGTAGCTATCAAA
TAA

Upstream 100 bases:

>100_bases
TAAATGTAAAAAAATTAATGATATATATTCAAATATGACATAGTGTTGTCAAAGCCTTCCTATATAATACAAATATAAGC
ATAAGGAAGGGGAATAAAAT

Downstream 100 bases:

>100_bases
AAACTATGAATTTTATAAAAAAACTAGCTTAATATTAATATACTAAGCTAGTTGCCATAAAATATTACTACTTTAAGTAT
TAATATTTTATGGCTTTAAT

Product: transcription activator, effector binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MEQIYCQSCGMAMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKEDEAIALMKNCLPNLK
RWRKEDIITKVVEKDKMIIVGKEIRTTNKDGAFMAVIPTLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFM
VGFQVTDTNSISEGMTYKVIPASKYCVVTAKGKMPDKIGAAWGYIWNAGLQRTYTGDFELYDKRYDGTENSEVDIYVAIK

Sequences:

>Translated_240_residues
MEQIYCQSCGMAMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKEDEAIALMKNCLPNLK
RWRKEDIITKVVEKDKMIIVGKEIRTTNKDGAFMAVIPTLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFM
VGFQVTDTNSISEGMTYKVIPASKYCVVTAKGKMPDKIGAAWGYIWNAGLQRTYTGDFELYDKRYDGTENSEVDIYVAIK
>Mature_240_residues
MEQIYCQSCGMAMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKEKGMKEDEAIALMKNCLPNLK
RWRKEDIITKVVEKDKMIIVGKEIRTTNKDGAFMAVIPTLWEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFM
VGFQVTDTNSISEGMTYKVIPASKYCVVTAKGKMPDKIGAAWGYIWNAGLQRTYTGDFELYDKRYDGTENSEVDIYVAIK

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 27730; Mature: 27730

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQIYCQSCGMAMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKE
CCCEEHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHH
KGMKEDEAIALMKNCLPNLKRWRKEDIITKVVEKDKMIIVGKEIRTTNKDGAFMAVIPTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCEEEEHHHH
WEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDTNSISEGMTYKVI
HHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEE
PASKYCVVTAKGKMPDKIGAAWGYIWNAGLQRTYTGDFELYDKRYDGTENSEVDIYVAIK
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MEQIYCQSCGMAMSEELYSTELNNKKNHEYCIYCYENGAFKHPNLTIEQMIDVCIPFMKE
CCCEEHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHH
KGMKEDEAIALMKNCLPNLKRWRKEDIITKVVEKDKMIIVGKEIRTTNKDGAFMAVIPTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCEEEEHHHH
WEEFENKKLGDKILNKVNKDEILGLYTDYENKEFGLYSFMVGFQVTDTNSISEGMTYKVI
HHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEE
PASKYCVVTAKGKMPDKIGAAWGYIWNAGLQRTYTGDFELYDKRYDGTENSEVDIYVAIK
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]