Click here to switch to the map view.

The map label for this gene is 226948647

Identifier: 226948647

GI number: 226948647

Start: 1603614

End: 1604621

Strand: Direct

Name: 226948647

Synonym: CLM_1542

Alternate gene names: NA

Gene position: 1603614-1604621 (Clockwise)

Preceding gene: 226948646

Following gene: 226948648

Centisome position: 38.59

GC content: 29.37

Gene sequence:

>1008_bases
ATGAAAAAGAGAATTGGTATATTATTAATGGCCTTTCTTTTAATTTTTTCAGCTTTATTTGTGGTAGGTTGCTCAAAAAA
GGAGGAAAAGAAGGAAAGCACAAATACTACACAGGAAAGTAATAAAAAAGAAAAAATTAAAATAGCCACTTTAAAAGGAC
CTACTGGTATGGGAATGGTTAAACTTATGGAAGAAAACAAAGAGGATTATGATATTTCTTTATTTGATGCTCCAGATCAA
ATAGTTTCTAAAGTAGTAAGTGGAGAAGTAGATGCAGCGGCAGTTCCATCTAATTTGGCTTCTGTTTTATATAATAAAAC
AAAGGGGCAAGTTCAATTAGTTGGAGTAAACACTTTAGGGGTCTTATATATTGTAGAAAACGGAGACACTATAAAAAATA
TAAAAGATCTAAATGGTGAAACTATTTATGCTACAGGAAAGGGGGCTACTCCAGAATTTATTTTGAATTATATATTAAAG
AAGAATGGATTGGATCCAGATAAGGATGTAAAAATAGAATATAAAGCTCAACATAATGATTTAGCAACTTTAGTAGCTTC
AAAAAAAGCAAAAATAGCAGTACTTCCAGAACCTTTTGTAACACTATCCAGAACTAAAAATAAGGATTTAAAAGTACAAT
TAGATTTAACAAAGGAATGGGAAAAAGTATCTGGAGAAGGAAAATTAACCATGGGAGCATTGGTATTTAAAAAGGATTTC
ATAGATAAAAGAGGAGAAGATGTAGAAACTTTTATAAATAATTATAAAAAATCTGTAGAGTTTGTAAATAACAATAAGGA
AGAAGCTAGCAAACTTATGGAGAAAAACGGTATAGTATCAAAGGCAAAAATAGCAGAGATGGCTATTCCAAAATGTAATA
TAGTATTTATGGATTCTAAAGATTCTAAGGATTCTCTAGAAAAATTTTATAATATTTTAAAAGACAATGACCCAAAATCC
ATTGGAGGAAAACTACCAGATGAAGATTTCTATTATAAGGGAAAATAA

Upstream 100 bases:

>100_bases
AATAAAGATAAAAAATATGAAATGGGAAAAGTCGAATCCAGTGTTTATATATGATTAAAAAATAAAAAGCTTATTAATAT
AATACAAGGAGGTTATATAT

Downstream 100 bases:

>100_bases
AACAATTTCAAAATTAGTTAGAAGAACTTTAATAATAATATTCTGGGTATTTATATGGGAGCTTAGCTCCCTTTTTATAA
ATAACGAGATTTTGCTTCCA

Product: putative lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKKRIGILLMAFLLIFSALFVVGCSKKEEKKESTNTTQESNKKEKIKIATLKGPTGMGMVKLMEENKEDYDISLFDAPDQ
IVSKVVSGEVDAAAVPSNLASVLYNKTKGQVQLVGVNTLGVLYIVENGDTIKNIKDLNGETIYATGKGATPEFILNYILK
KNGLDPDKDVKIEYKAQHNDLATLVASKKAKIAVLPEPFVTLSRTKNKDLKVQLDLTKEWEKVSGEGKLTMGALVFKKDF
IDKRGEDVETFINNYKKSVEFVNNNKEEASKLMEKNGIVSKAKIAEMAIPKCNIVFMDSKDSKDSLEKFYNILKDNDPKS
IGGKLPDEDFYYKGK

Sequences:

>Translated_335_residues
MKKRIGILLMAFLLIFSALFVVGCSKKEEKKESTNTTQESNKKEKIKIATLKGPTGMGMVKLMEENKEDYDISLFDAPDQ
IVSKVVSGEVDAAAVPSNLASVLYNKTKGQVQLVGVNTLGVLYIVENGDTIKNIKDLNGETIYATGKGATPEFILNYILK
KNGLDPDKDVKIEYKAQHNDLATLVASKKAKIAVLPEPFVTLSRTKNKDLKVQLDLTKEWEKVSGEGKLTMGALVFKKDF
IDKRGEDVETFINNYKKSVEFVNNNKEEASKLMEKNGIVSKAKIAEMAIPKCNIVFMDSKDSKDSLEKFYNILKDNDPKS
IGGKLPDEDFYYKGK
>Mature_335_residues
MKKRIGILLMAFLLIFSALFVVGCSKKEEKKESTNTTQESNKKEKIKIATLKGPTGMGMVKLMEENKEDYDISLFDAPDQ
IVSKVVSGEVDAAAVPSNLASVLYNKTKGQVQLVGVNTLGVLYIVENGDTIKNIKDLNGETIYATGKGATPEFILNYILK
KNGLDPDKDVKIEYKAQHNDLATLVASKKAKIAVLPEPFVTLSRTKNKDLKVQLDLTKEWEKVSGEGKLTMGALVFKKDF
IDKRGEDVETFINNYKKSVEFVNNNKEEASKLMEKNGIVSKAKIAEMAIPKCNIVFMDSKDSKDSLEKFYNILKDNDPKS
IGGKLPDEDFYYKGK

Specific function: Unknown

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37287; Mature: 37287

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRIGILLMAFLLIFSALFVVGCSKKEEKKESTNTTQESNKKEKIKIATLKGPTGMGMV
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHCCCCCEEEEEEECCCCCCCHH
KLMEENKEDYDISLFDAPDQIVSKVVSGEVDAAAVPSNLASVLYNKTKGQVQLVGVNTLG
HHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCHHCHHHHHHHHHCCCCCEEEEEEEECEE
VLYIVENGDTIKNIKDLNGETIYATGKGATPEFILNYILKKNGLDPDKDVKIEYKAQHND
EEEEEECCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
LATLVASKKAKIAVLPEPFVTLSRTKNKDLKVQLDLTKEWEKVSGEGKLTMGALVFKKDF
HHHHHHCCCCEEEECCCCCEEEECCCCCCEEEEEECCHHHHHHCCCCCEEHHHHHHHHHH
IDKRGEDVETFINNYKKSVEFVNNNKEEASKLMEKNGIVSKAKIAEMAIPKCNIVFMDSK
HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECC
DSKDSLEKFYNILKDNDPKSIGGKLPDEDFYYKGK
CCHHHHHHHHHHHCCCCCHHCCCCCCCCCCEECCC
>Mature Secondary Structure
MKKRIGILLMAFLLIFSALFVVGCSKKEEKKESTNTTQESNKKEKIKIATLKGPTGMGMV
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHCCCCCEEEEEEECCCCCCCHH
KLMEENKEDYDISLFDAPDQIVSKVVSGEVDAAAVPSNLASVLYNKTKGQVQLVGVNTLG
HHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCHHCHHHHHHHHHCCCCCEEEEEEEECEE
VLYIVENGDTIKNIKDLNGETIYATGKGATPEFILNYILKKNGLDPDKDVKIEYKAQHND
EEEEEECCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
LATLVASKKAKIAVLPEPFVTLSRTKNKDLKVQLDLTKEWEKVSGEGKLTMGALVFKKDF
HHHHHHCCCCEEEECCCCCEEEECCCCCCEEEEEECCHHHHHHCCCCCEEHHHHHHHHHH
IDKRGEDVETFINNYKKSVEFVNNNKEEASKLMEKNGIVSKAKIAEMAIPKCNIVFMDSK
HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECC
DSKDSLEKFYNILKDNDPKSIGGKLPDEDFYYKGK
CCHHHHHHHHHHHCCCCCHHCCCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA