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The map label for this gene is yfeT [C]

Identifier: 226948624

GI number: 226948624

Start: 1576416

End: 1577261

Strand: Direct

Name: yfeT [C]

Synonym: CLM_1519

Alternate gene names: 226948624

Gene position: 1576416-1577261 (Clockwise)

Preceding gene: 226948621

Following gene: 226948625

Centisome position: 37.94

GC content: 27.42

Gene sequence:

>846_bases
ATGGGAGTTCTTTTAAGAATAAGAGAAAATTTTGATTCTATGACTAAATCAGAAAAAAAAATAGCAGAATATATTTTTAA
AAGTCCAAGAGATATAATAAGTGATTCTGCCCAAGAAATAGCAATCAAAACAAGTACTTCTCCAGCATCCGTTATTAGAT
TTACTAAAAAAGTAGGATATAATTCTCTTAATGAATTTAAATTTGCACTTGTCGCAGAAGAATATACTAAAGAAAGTACA
GAGTTTGATTATATAATAAATTATAATGATAGTATAGATTTAATTATTAATAAACTTGGAAATAAAATGATTGACACCAT
AAATGATACTAAGGAATTAGTAGATGATGAAAAATTGCTAGAAGCTGTTAAAGCAATAAAAAATGCAGAAACAATTTACC
TATATGGTGTTGGAGCATCTGCTATGGTGGCTATGGATTTTCAATATAAATTGCTTAGAATAAATAAAAAGGTAATGTTC
CAACAGGATTCACATCTGCAGTTAGCAGTATCAGTACATATTACAAATAGAGATGTTGCTGTAGCTATTTCATATAGTGG
AAATACAAGAGAAGTAAATTTAGCAGTAGAGGAAGCGAAAAAAAATGGTGCTACCACTATAGCTATAACTAAATGTGGAA
AAAGCATTTTAAGCAATATTGCGGATATAAATTTAAATATACCCAGTATAGAAAAAGATTTGAGAATAGGGGCAATTTCT
TCTAGAACATCTCAATTATTTGTAACTGATAGTTTGTTTTTAGGAATTGCAAAGGAAAATTTGGATAAAACAGAAAAGAA
TTTAATTAATACAAGAAATTTAGTAGAAGTTTTAAAAAGAGAATAG

Upstream 100 bases:

>100_bases
ATAAACTAAATATTGAATTATATTTAGGTTGATGGAATTAATTAAAAGATTGAAGTTTGTATAATATTTAGAAAGAAATA
ATAGAAAACTGAGGTGAAGT

Downstream 100 bases:

>100_bases
ATTATAAAACTTTTTATTTTAAACTGAAAAGTTAATTTAGATGGCGAAGCAATGAGTATAAAAATTCATTGCTTTTATTT
TATTTAAACATAAGAACGAA

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MGVLLRIRENFDSMTKSEKKIAEYIFKSPRDIISDSAQEIAIKTSTSPASVIRFTKKVGYNSLNEFKFALVAEEYTKEST
EFDYIINYNDSIDLIINKLGNKMIDTINDTKELVDDEKLLEAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMF
QQDSHLQLAVSVHITNRDVAVAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS
SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLKRE

Sequences:

>Translated_281_residues
MGVLLRIRENFDSMTKSEKKIAEYIFKSPRDIISDSAQEIAIKTSTSPASVIRFTKKVGYNSLNEFKFALVAEEYTKEST
EFDYIINYNDSIDLIINKLGNKMIDTINDTKELVDDEKLLEAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMF
QQDSHLQLAVSVHITNRDVAVAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS
SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLKRE
>Mature_280_residues
GVLLRIRENFDSMTKSEKKIAEYIFKSPRDIISDSAQEIAIKTSTSPASVIRFTKKVGYNSLNEFKFALVAEEYTKESTE
FDYIINYNDSIDLIINKLGNKMIDTINDTKELVDDEKLLEAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQ
QDSHLQLAVSVHITNRDVAVAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAISS
RTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLKRE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=285, Percent_Identity=32.280701754386, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87082130, Length=281, Percent_Identity=30.6049822064057, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI87082369, Length=277, Percent_Identity=26.7148014440433, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788159, Length=281, Percent_Identity=27.7580071174377, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31505; Mature: 31373

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVLLRIRENFDSMTKSEKKIAEYIFKSPRDIISDSAQEIAIKTSTSPASVIRFTKKVGY
CCEEEEEHHCHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC
NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDLIINKLGNKMIDTINDTKELVDDEKLL
CCHHHHHEEEEEHHHCCCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHCHHHHH
EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA
HHHHHHCCCCEEEEEEECCCEEEEECCEEEEEEECHHHEEECCCCEEEEEEEEEECCCEE
VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS
EEEEECCCCEEEEEEEEHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLKRE
CCCCEEEEEHHHHEEHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GVLLRIRENFDSMTKSEKKIAEYIFKSPRDIISDSAQEIAIKTSTSPASVIRFTKKVGY
CEEEEEHHCHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC
NSLNEFKFALVAEEYTKESTEFDYIINYNDSIDLIINKLGNKMIDTINDTKELVDDEKLL
CCHHHHHEEEEEHHHCCCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHCHHHHH
EAVKAIKNAETIYLYGVGASAMVAMDFQYKLLRINKKVMFQQDSHLQLAVSVHITNRDVA
HHHHHHCCCCEEEEEEECCCEEEEECCEEEEEEECHHHEEECCCCEEEEEEEEEECCCEE
VAISYSGNTREVNLAVEEAKKNGATTIAITKCGKSILSNIADINLNIPSIEKDLRIGAIS
EEEEECCCCEEEEEEEEHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
SRTSQLFVTDSLFLGIAKENLDKTEKNLINTRNLVEVLKRE
CCCCEEEEEHHHHEEHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]