Click here to switch to the map view.

The map label for this gene is 226948516

Identifier: 226948516

GI number: 226948516

Start: 1463368

End: 1463571

Strand: Direct

Name: 226948516

Synonym: CLM_1406

Alternate gene names: NA

Gene position: 1463368-1463571 (Clockwise)

Preceding gene: 226948515

Following gene: 226948517

Centisome position: 35.22

GC content: 25.0

Gene sequence:

>204_bases
ATGGCTATAAAAAATAAATTGTTAGATATTAGATTAAGTATGGGTTACAAAACGCAAAAGGAATTTGCTGAGTTTTTAGG
GATAAAACGTGTTCAATATAATAAGTATGAAAACAATAAAGAACAACCAGCCCTAGAAGCTCTATATAAAATTAGTTTGA
AGTTAAATATAAAAATGGAGAATATTATTTACTTAGATGAATAA

Upstream 100 bases:

>100_bases
AGATATAATAATTTTATTCTTTTTTTAATATACATTTTTAAATATATAAAGGAAATAATATTGTATTTTAGAATATTATG
TAATGGGAGGTATTAGATAT

Downstream 100 bases:

>100_bases
TATTCTTTTATTTTTTATAGTAATAGTTCAAAATAATATGTTTTAGTTCAAAATAGGAAATTTTTATACCAAATAAGTAT
ATAGTATTAGTAAAGAAGGG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAIKNKLLDIRLSMGYKTQKEFAEFLGIKRVQYNKYENNKEQPALEALYKISLKLNIKMENIIYLDE

Sequences:

>Translated_67_residues
MAIKNKLLDIRLSMGYKTQKEFAEFLGIKRVQYNKYENNKEQPALEALYKISLKLNIKMENIIYLDE
>Mature_66_residues
AIKNKLLDIRLSMGYKTQKEFAEFLGIKRVQYNKYENNKEQPALEALYKISLKLNIKMENIIYLDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8000; Mature: 7868

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKNKLLDIRLSMGYKTQKEFAEFLGIKRVQYNKYENNKEQPALEALYKISLKLNIKME
CCCCCCEEEEEEECCCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHEEEEEEEEEE
NIIYLDE
EEEEECC
>Mature Secondary Structure 
AIKNKLLDIRLSMGYKTQKEFAEFLGIKRVQYNKYENNKEQPALEALYKISLKLNIKME
CCCCCEEEEEEECCCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHEEEEEEEEEE
NIIYLDE
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA