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The map label for this gene is ydiU [C]

Identifier: 226948463

GI number: 226948463

Start: 1409033

End: 1410508

Strand: Direct

Name: ydiU [C]

Synonym: CLM_1348

Alternate gene names: 226948463

Gene position: 1409033-1410508 (Clockwise)

Preceding gene: 226948462

Following gene: 226948464

Centisome position: 33.91

GC content: 37.53

Gene sequence:

>1476_bases
ATGAAAGAAAGAAAAGTAATAATAAAAACAGGCTTGAATTTAGAAAACAGCTATACTAGCCTTCCAGAAATATTTTTCAC
TAGACAAAGCCCAAGCTGTATACCTTCACCAAAATTAGCTGTATTGAATTATCCGTTAATAACATCCTTGGGACTAAATG
CCCAAGTATTACAAAGTGCTGATGGAGTAGATATACTTGCAGGAAACAAGATTCCAGAAGAGGCTATACCTATTGCTCAA
GCATATGCAGGACATCAATTTGGTCATTTTACCATGTTGGGTGATGGAAGAGCTCTTCTTTTAGGAGAACATATCACTCC
ACTAGGTGATAGATTTGATATTCAGCTTAAGGGTTCAGGTAAAACTCCATATTCACGAGGAGGAGATGGGAAAGCTGCAT
TAGGTCCGATGCTAAGAGAATATATTATAAGTGAGGCAATGAATGCATTGGGAATTCCCACCACTCGTAGTCTAGCCGTA
GTTACAACAGGTGAGTCAATAATGCGGGAAGCTGAACTACCCGGTGCAATACTAACTCGTGTAGCGGCCAGTCATATACG
TGTTGGTACATTTGAATACGTTTCAAGATGGGGGACAGTTGAAGAGCTTAGAGCCCTAGCTAATTATACTTTGCAAAGAC
ATTTTAAAAAAGGGTATGATAAAGAGAACCCTTATCTCTTTTTGCTTCAGGAGGTAATCGAGAAACAGGCTGAGCTTATT
GCAAAATGGCAACTGGTTGGTTTTGTTCATGGAGTAATGAATACCGATAATATGACAATTAGTGGAGAAACAATTGATTA
TGGTCCTTGTGCATTCATGGATGTATATGATCCTGAAACTGTATTTAGTTCTATTGATATTTATGGTAGATATGCCTATG
GGAATCAACCTAATATTGCTACATGGAATCTTGCAAGGTTTGCTGAAACTCTGCTACCATTGTTGCATATTAATCCAAAT
GAGGCTATCAAAATAGCAGAGAACGCGGTTTCAGATTTTACTAAGTTGTATAAGAATAATTGGCTTTCTGGAATGAGGGC
AAAACTTGGGATATTTAACGAAGAGCTCGAGGATGAATATCTAATTGAAGATCTTCTAAGTATAATGCATAAGTATGGTG
CAGATTATACCAATACATTCCGCGCATTGACTTTTGACAATATAGAAGATACGGTACTGTTTGATAAAATGGAATTTGAT
AAGTGGTATAAGCTATGGCAGGAGAGACTAACAAGACAAGAAGAAGCAAAACTTTCTTCAAAGCAGCTTATGAAAAGTAG
TAATCCATCAGTAATTCCGCGTAACCACAGAGTAGAAGAAGCACTAGAGGCTGCGGTGAAAGAAGGAGACTATAGTGTTA
TGGAGAAACTTTTAGATGCTCTTTCAAAACCATATGATCACTCTAAAGAACAGGATTATTACTCTAAATTGCCTGAACCA
TCAACTTGTCCATATCAAACCTATTGTGGGACCTAA

Upstream 100 bases:

>100_bases
AACTAAAAAGAGTTTAGTTATTATAGAAGTTTATATCTAAAAAATAATAGAAACTATGATTTTGTTTCATGTAAAAAATA
AGAGGAGAAAAGGAGATACA

Downstream 100 bases:

>100_bases
TACAAAATGAGCTAGTAAAATATATTAAGTTTTACTAGCTCATTTTATATAAAAATATAATTGTCGGTTGTTTTCATTTA
CATTTAGGAAAAATATACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSCIPSPKLAVLNYPLITSLGLNAQVLQSADGVDILAGNKIPEEAIPIAQ
AYAGHQFGHFTMLGDGRALLLGEHITPLGDRFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMREAELPGAILTRVAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIATWNLARFAETLLPLLHINPN
EAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLFDKMEFD
KWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
STCPYQTYCGT

Sequences:

>Translated_491_residues
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSCIPSPKLAVLNYPLITSLGLNAQVLQSADGVDILAGNKIPEEAIPIAQ
AYAGHQFGHFTMLGDGRALLLGEHITPLGDRFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMREAELPGAILTRVAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIATWNLARFAETLLPLLHINPN
EAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLFDKMEFD
KWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
STCPYQTYCGT
>Mature_491_residues
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSCIPSPKLAVLNYPLITSLGLNAQVLQSADGVDILAGNKIPEEAIPIAQ
AYAGHQFGHFTMLGDGRALLLGEHITPLGDRFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMREAELPGAILTRVAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIATWNLARFAETLLPLLHINPN
EAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLFDKMEFD
KWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
STCPYQTYCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=396, Percent_Identity=39.8989898989899, Blast_Score=262, Evalue=4e-70,
Organism=Escherichia coli, GI1787999, Length=466, Percent_Identity=38.6266094420601, Blast_Score=333, Evalue=2e-92,
Organism=Saccharomyces cerevisiae, GI6325034, Length=334, Percent_Identity=32.9341317365269, Blast_Score=167, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55312; Mature: 55312

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSCIPSPKLAVLNYPLITSLGLNAQVLQSA
CCCCEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCEEEECCCHHHHCCCCHHHHHCC
DGVDILAGNKIPEEAIPIAQAYAGHQFGHFTMLGDGRALLLGEHITPLGDRFDIQLKGSG
CCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCEEEEEECCC
KTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGESIMREAELPGAILTR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCHHHHHH
VAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIA
HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCE
TWNLARFAETLLPLLHINPNEAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEY
EEHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLFDKMEFDKWYKLWQERLTRQEEAKLSS
HHHHHHHHHHHHCCCHHHCEEEEEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
STCPYQTYCGT
CCCCCCCCCCC
>Mature Secondary Structure
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSCIPSPKLAVLNYPLITSLGLNAQVLQSA
CCCCEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCEEEECCCHHHHCCCCHHHHHCC
DGVDILAGNKIPEEAIPIAQAYAGHQFGHFTMLGDGRALLLGEHITPLGDRFDIQLKGSG
CCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCEEEEEECCC
KTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGESIMREAELPGAILTR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCHHHHHH
VAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIA
HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCE
TWNLARFAETLLPLLHINPNEAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEY
EEHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLFDKMEFDKWYKLWQERLTRQEEAKLSS
HHHHHHHHHHHHCCCHHHCEEEEEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
STCPYQTYCGT
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA