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The map label for this gene is yhdW [H]

Identifier: 226948458

GI number: 226948458

Start: 1401934

End: 1403820

Strand: Direct

Name: yhdW [H]

Synonym: CLM_1343

Alternate gene names: 226948458

Gene position: 1401934-1403820 (Clockwise)

Preceding gene: 226948457

Following gene: 226948459

Centisome position: 33.74

GC content: 30.84

Gene sequence:

>1887_bases
ATGACAACGAGAATGGAGACAAGGCATAGTAAACCGATATCCACATTAAAAATGATAAGAAAAAATTTCACCTATTTTAA
AAAGAGTTTTTTTGTAAATATTGGATTTGAATCGATATACAAAGTGTTGACAAGCTTTATATTTCTCCCATTTATTACAA
TGGTGCTAAATTATTTTATGCATCTAAGAGGGATGAAGATGATGGCAAATAACCAGATATTAACTTTTGCAAGAAGTATT
CCAGGAATTTTGACAATTTTAATTTTAGGAATTCTTAGCTTTTTCTTTATTTTTATAGAATATGCAGGACTTATTGTAAT
ATCACAGGAAACATATTTTGATAAAAAGATTTCAGCAAAAGCATCTTTTTTTACAGCAATGAAAAGTATTAGAGGTATTA
TAAAAATAGGCTCTATTCCAATTATAATATATGTTCTTTTTATTATTCCTTTTGTAGCTAGTTCAATAGGGTTGTCTTCA
AGTTTACTCCCGAAGATTGAAATACCAGCCTTTATTATGGATGTAGTATACAAAACACCAAAATGGATAGGTTTATATGC
AATTGTATTTTTTGTACTATTCTATTTTTTAATTAGATGGATTTTTTCATTGCACGTTGTAGTATTGGAAGGAAAGGATT
TCTCAAGTGCATTAAAGAGAAGTTCGCAGCTCGTAAAAGGATCTTTTCTTAAGATTTGGACTACTATGTTTTTGTGGAAC
TTAAGTATTTTTGCTATTGTAGCAGTAGTAGCGATTTTAGTGGGAATTGGTATGGCGCTTTTAAATGAAGTACTAAAAGG
AAATGTGAAACTATTTGTAACTATTCTTTCCTTTGTTACAACAATGGGTGGAATATTAGTCATGATAGCTACTTTATTTA
TTTCTCCGCTTACTATTATGTTGATTACTCAATTGTATTATAGACAAGTAAAAATGAAAGATGGTGTAGAACCAATACCC
ATGATTATTACAGCAACACCAAGCAAAATAAACTGGCAAAATCTATTTAATCGACATAAGAAAAAGCTAATAGCAGTTAG
TGTGCTAGGAATAATGATATTTACATGGCTTTCCTATGTTTATTTTATTACTTATGAGTTTGATGCTAATAACAACTTGG
TTACTGTTACCGCTCACAGGGGAGATGCTGTTAATGCACCAGATAACACTATGAGTTCACTTTTAGGTGCTATTGCCAAC
AAAGCAGATTATAGTGAGCTGGACGTACAGCAAACAAAGGATGGAATGGTAGTTTTAACCCACGATACCAATTTAAAGAA
CAATACAGGGGTAAACAAAAATATTTGGGAATTGACCTTTGATGAAGTAGAAAAATTAGATGTGGGAAGTCATTTTTCAC
CTAAGTTTGATGGCGAGAAAATTCCGACTTTGGACAGCATTATGAAAGCAGCCAATAAAAAGATAAAGCTAAATATAGAG
ATTAAACTGAATGGACATGATCAAAAGCTAGAAGAAAAGGTGGTAAAGCTTATAGAGGACAATAATTTTGTAGATCAATG
CGTAGTTACGTCCTTAGATTATAATGCTTTGCAAAAGGTAAAAAAATTAAATCCTAAAATCAAGGTGGGATATATTGTAT
TTGCAGGTATGGGAGATGTTACTGCATTGAATGTTGACTTCTTAAGTGTAGAAGAAGCCGTTGCAACGCCAGAATTTATT
GAGAAAGTGCATAAAAATAATAAGAGGATTCATGTTTGGACAATAAATGATCCCGAAAAAATGGAAAAGTTTATAGATTT
ACAAGTAGATAGTATTATTACAGATGACTCAAAAGAAGTAACAAGGTTAATTGAGGAGAAAAAAGATAAGCAGCTTAGAA
ATGAAATAGATTATATTTACAAGATTGTAGCGTTATTTAATAACTAG

Upstream 100 bases:

>100_bases
AATGCTTGTTATTATATAAGAAAAACATAATAATGTATGTTAATTTTAGCGGTATTTATTGTAGCTGAATTGAAAAAGAA
AATGTAAAGGGGACAGATCA

Downstream 100 bases:

>100_bases
ATAAAGCTTTAAAATTTCTGAATTATTTGTTATATACGAAAAAAGGAGAAGTGTTAATAAAAGTCACGATGAACTTATTT
AGTCCTTAGAAAGAAGTTTA

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 628; Mature: 627

Protein sequence:

>628_residues
MTTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSI
PGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAKASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSS
SLLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN
LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQVKMKDGVEPIP
MIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIAN
KADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE
IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFI
EKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIEEKKDKQLRNEIDYIYKIVALFNN

Sequences:

>Translated_628_residues
MTTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSI
PGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAKASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSS
SLLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN
LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQVKMKDGVEPIP
MIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIAN
KADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE
IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFI
EKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIEEKKDKQLRNEIDYIYKIVALFNN
>Mature_627_residues
TTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSIP
GILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAKASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSSS
LLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWNL
SIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQVKMKDGVEPIPM
IITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANK
ADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIEI
KLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFIE
KVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIEEKKDKQLRNEIDYIYKIVALFNN

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI146198640, Length=170, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=6e-14,
Organism=Homo sapiens, GI260763878, Length=158, Percent_Identity=34.8101265822785, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI260763880, Length=158, Percent_Identity=34.8101265822785, Blast_Score=75, Evalue=3e-13,
Organism=Homo sapiens, GI260763876, Length=260, Percent_Identity=25.3846153846154, Blast_Score=75, Evalue=3e-13,
Organism=Homo sapiens, GI7706617, Length=129, Percent_Identity=31.7829457364341, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1789858, Length=231, Percent_Identity=25.974025974026, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542344, Length=166, Percent_Identity=27.710843373494, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 71530; Mature: 71399

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
HLRGMKMMANNQILTFARSIPGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAK
HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHH
ASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSSSLLPKIEIPAFIMDVVYKTP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
KWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN
CHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITQLYYRQVKMKDGVEPIPMIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYV
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANKADYSELDVQQTKDGMVVLT
EEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHCCCCEEEEE
HDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE
ECCCCCCCCCCCCCHHHEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEE
IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDV
EEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCE
TALNVDFLSVEEAVATPEFIEKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEV
EEEEEEHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHH
TRLIEEKKDKQLRNEIDYIYKIVALFNN
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
HLRGMKMMANNQILTFARSIPGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAK
HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHH
ASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSSSLLPKIEIPAFIMDVVYKTP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
KWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN
CHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITQLYYRQVKMKDGVEPIPMIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYV
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANKADYSELDVQQTKDGMVVLT
EEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHCCCCEEEEE
HDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE
ECCCCCCCCCCCCCHHHEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEE
IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDV
EEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCE
TALNVDFLSVEEAVATPEFIEKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEV
EEEEEEHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHH
TRLIEEKKDKQLRNEIDYIYKIVALFNN
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]