Click here to switch to the map view.

The map label for this gene is rpsA [H]

Identifier: 226948426

GI number: 226948426

Start: 1370026

End: 1371189

Strand: Direct

Name: rpsA [H]

Synonym: CLM_1310

Alternate gene names: 226948426

Gene position: 1370026-1371189 (Clockwise)

Preceding gene: 226948425

Following gene: 226948427

Centisome position: 32.97

GC content: 28.69

Gene sequence:

>1164_bases
ATGTCAGAAGAAATAACAATGAAGGATATGATGGAAGAAATAAATTCTTCAATGAAAAGAATTCATAAAGGAGAACTATT
AAAAGGAAAAGTAATTTCAGTTTCAGATAAAGAAGCCGTGTTAAATATAGGATATATATCTGATGGAATATTACCTAAAA
AAGAAGTTGTAGATAATGAAGAGGTAAATCTTAAAGACATAATAAGTAAAGATGATGTAATTTCTGTTTGTGTACTAGAG
GTAAATGATGGTGAAGGAAATGTACTTTTATCTAAGAAAAAAGCAGAAATTATAGAAGCCTTTGCAAAGCTAGAAAAAGC
TTTTAAAAATGAAGAAATACTAGAAATCAAAGTAGAAGAAATAATAAAGGGAGGAGCTATAGGCCATATACAAGGTATAA
GAGTATTTATACCAGCTTCTCAAATAGATAATAAATATGTTAAAGATTTAAATGTATTTAAAGGTGAAATGGTAAAAGGA
AGATTAATAGAATTAGATAAACAAAAGAGAAAAATAGTTTTATCTAGCAGAGTAGTAAAAGAAGAAGAAGAGGCTAAAAG
AAAAGAAGAACTATTGAATAGTTTAGAAAAGGGACAAAAAATAGAAGGTGTTGTAAGAAGACTAGAAAAGTTTGGAGCTT
TTGTGGATATAGGTGGAATGGATGGATTAGTTCATAATTCTCAGCTATCCTGGGGAAGGGTAAATCATCCTTCAGAAGTA
GTATCTATAGGAGACAAAGTAGAGGTCTATGTTTTAGATTTTGATAAGGATACTAAAAAAATAGCTTTATCTTTAAAGGA
TGTTAAGAAGGATCCTTGGAATACAGTAAAGGATAAATATGCTGTAGGTAGTGTGATAGAAGGAACAATAGTTAAATTAT
TAAACTTTGGAGCCTTTGTAGAAGTGGAAAATGGTATAGAAGGATTAGTTCATATATCAGAAATAACTGATGAACATATA
GCTAAACCATCAGAAAAGTTAAATATAGGCGATAAAGTTAAAGTAAAAGTATTAGAAGTAAATTCAGATGAAAAGAGAAT
GTCATTAAGCATAAAAGAAGCAACAGAAAAACCAAAGGAAGATTTCTCAAAATATGATGATTCTAAAGAAGAAGACGTAA
CTTTAGGGGATTTATTTGGAGATAAGTTTAAAGATTTGTTTTAA

Upstream 100 bases:

>100_bases
TTAAAGCATATACTATTTTTATATATGTATATGTTTTAAATTATGATAAAATTATATTAATTGTATTAGTATAAAAAGAA
AAGTAAGGGGTTGTTTTTTT

Downstream 100 bases:

>100_bases
TATACAAATTATCACTTTAATTTAAGAGATATGCATTACTAAGACACTTATATAATAGGTTTTAGTAATGCTATTTATAT
AATTATTCAATGAATGCTAT

Product: 30S ribosomal protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLE
VNDGEGNVLLSKKKAEIIEAFAKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKG
RLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHI
AKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF

Sequences:

>Translated_387_residues
MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLE
VNDGEGNVLLSKKKAEIIEAFAKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKG
RLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHI
AKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF
>Mature_386_residues
SEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEV
NDGEGNVLLSKKKAEIIEAFAKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGR
LIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVV
SIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHIA
KPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF

Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]

COG id: COG0539

COG function: function code J; Ribosomal protein S1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 S1 motif domains [H]

Homologues:

Organism=Homo sapiens, GI70980549, Length=264, Percent_Identity=28.4090909090909, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1787140, Length=353, Percent_Identity=36.8271954674221, Blast_Score=227, Evalue=8e-61,
Organism=Escherichia coli, GI145693187, Length=76, Percent_Identity=50, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082262, Length=78, Percent_Identity=48.7179487179487, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323885, Length=210, Percent_Identity=29.5238095238095, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: 16,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003451
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR000110
- InterPro:   IPR022967 [H]

Pfam domain/function: PF02401 LYTB; PF00575 S1 [H]

EC number: =1.17.1.2 [H]

Molecular weight: Translated: 43444; Mature: 43312

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHCCCC
EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAFAKLEKAFKNEEILEIKVEE
CCCHHHHCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
IIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELDKQKRKIVLSSRVVK
HHCCCCEEEECCEEEEEEHHHHCHHHHHHHHHHHCCCCCCHHEECCHHHHHHHHHHHHHH
EEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHH
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFV
HCCCCEEEEEEEECCCCCHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
EVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKE
EECCCCCCEEEHHHHHHHHHCCCHHHCCCCCEEEEEEEEECCCCHHHEEEHHHHHCCCHH
DFSKYDDSKEEDVTLGDLFGDKFKDLF
HHHHCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHCCCC
EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAFAKLEKAFKNEEILEIKVEE
CCCHHHHCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
IIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELDKQKRKIVLSSRVVK
HHCCCCEEEECCEEEEEEHHHHCHHHHHHHHHHHCCCCCCHHEECCHHHHHHHHHHHHHH
EEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHH
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFV
HCCCCEEEEEEEECCCCCHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
EVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKE
EECCCCCCEEEHHHHHHHHHCCCHHHCCCCCEEEEEEEEECCCCHHHEEEHHHHHCCCHH
DFSKYDDSKEEDVTLGDLFGDKFKDLF
HHHHCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]