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The map label for this gene is 226948410

Identifier: 226948410

GI number: 226948410

Start: 1352543

End: 1353454

Strand: Direct

Name: 226948410

Synonym: CLM_1294

Alternate gene names: NA

Gene position: 1352543-1353454 (Clockwise)

Preceding gene: 226948409

Following gene: 226948411

Centisome position: 32.55

GC content: 23.03

Gene sequence:

>912_bases
ATGCAGTTATACAAAATAAATAATTACAAAGTAATAGCTAAAAATTTTTATAGAGAAAGAAATATAATTAAAACCTTAGA
ATTTTATAATAAAGCTTATAATACTCCAATGGGTTCAAAAGATGTAGAACTATTATTGGATATGGCTTTAGTATATGATG
AATTAGAGGAGTATGAAAAAGCTGAGAAAAAGTATAAAGAAATATTAAAAGTTAATCCAAAGGATTCTAGGGCTTTTTAT
GGATTAGCTATAATCTATGATAATAAAGAAGAATATAAGAAAGCTATAAAACTATATGAGAAGGCTATAGAATATGATAA
AAATTATAATAGAGCCTACTTTTTTTTAGCAGGAGCTTATGATAATGTAGGAGAAAAAGAAAAGGCTATAAAATGTTATG
AAAAAGTAATATCTTTGGATGAAAAGGATTTTTGGAGTTATGTAAATTTAAGCTCTATATATGAAGAAGCAGGTTTCTTG
GAAAAAGCTTTGTGTTTGGCGGATAAAGCTTTGGAATTGTATCCTAATCATTATATGCCTTTATTTAATAAGGGAGTTGT
ATATAAAAAACTAAATAAATTAGAAGAAGCTATATCAAATTATAAATTATCTATAGAAGATAATGAAAATTACTCTTATA
GTTATTTGAATTTAGCTGTTATATATAAAGAATTAAAGGATTATAAAAAAGCTATAAATATAATAAGTGAAGGTATATTA
AATAATACAGAGGAAGGATTTTTATATTATAATAGAGCTTGTTATTATACTTATTTAAAAGAATATGAAAAAGCTATGAA
GGATTTATATAAGGCAGTAGAATTATATCCTGGATTTGTTAAATACATAAAAGTGGATGAAGAATTACATATATTAAAAG
ATAGAAAAGATTTTATGAATTTAATTAAATAA

Upstream 100 bases:

>100_bases
TAAAATCATATAAGATTTAATATTAATTAGTATTTATTTTGATTTTATATATTTCATGTTATAAAATATAGTTAATCTAT
GCATTAGAAGGAGTAAAAAT

Downstream 100 bases:

>100_bases
AATTAATTTACTAAAGTTTATTTAAAAACCAGCAAAGCTAAAGAAAACATTCACATAAACTAAGAGAGACAAGTTTAGTG
TACTATAACTGGAATTACAA

Product: tetratricopeptide repeat family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MQLYKINNYKVIAKNFYRERNIIKTLEFYNKAYNTPMGSKDVELLLDMALVYDELEEYEKAEKKYKEILKVNPKDSRAFY
GLAIIYDNKEEYKKAIKLYEKAIEYDKNYNRAYFFLAGAYDNVGEKEKAIKCYEKVISLDEKDFWSYVNLSSIYEEAGFL
EKALCLADKALELYPNHYMPLFNKGVVYKKLNKLEEAISNYKLSIEDNENYSYSYLNLAVIYKELKDYKKAINIISEGIL
NNTEEGFLYYNRACYYTYLKEYEKAMKDLYKAVELYPGFVKYIKVDEELHILKDRKDFMNLIK

Sequences:

>Translated_303_residues
MQLYKINNYKVIAKNFYRERNIIKTLEFYNKAYNTPMGSKDVELLLDMALVYDELEEYEKAEKKYKEILKVNPKDSRAFY
GLAIIYDNKEEYKKAIKLYEKAIEYDKNYNRAYFFLAGAYDNVGEKEKAIKCYEKVISLDEKDFWSYVNLSSIYEEAGFL
EKALCLADKALELYPNHYMPLFNKGVVYKKLNKLEEAISNYKLSIEDNENYSYSYLNLAVIYKELKDYKKAINIISEGIL
NNTEEGFLYYNRACYYTYLKEYEKAMKDLYKAVELYPGFVKYIKVDEELHILKDRKDFMNLIK
>Mature_303_residues
MQLYKINNYKVIAKNFYRERNIIKTLEFYNKAYNTPMGSKDVELLLDMALVYDELEEYEKAEKKYKEILKVNPKDSRAFY
GLAIIYDNKEEYKKAIKLYEKAIEYDKNYNRAYFFLAGAYDNVGEKEKAIKCYEKVISLDEKDFWSYVNLSSIYEEAGFL
EKALCLADKALELYPNHYMPLFNKGVVYKKLNKLEEAISNYKLSIEDNENYSYSYLNLAVIYKELKDYKKAINIISEGIL
NNTEEGFLYYNRACYYTYLKEYEKAMKDLYKAVELYPGFVKYIKVDEELHILKDRKDFMNLIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 8 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=259, Percent_Identity=26.6409266409266, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI32307148, Length=259, Percent_Identity=26.6409266409266, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI310123097, Length=232, Percent_Identity=25, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310131789, Length=232, Percent_Identity=25, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310110582, Length=232, Percent_Identity=25, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=234, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115532692, Length=234, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17647755, Length=254, Percent_Identity=27.5590551181102, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24585827, Length=254, Percent_Identity=27.5590551181102, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24585829, Length=254, Percent_Identity=27.5590551181102, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24647123, Length=188, Percent_Identity=25.531914893617, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 36216; Mature: 36216

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLYKINNYKVIAKNFYRERNIIKTLEFYNKAYNTPMGSKDVELLLDMALVYDELEEYEK
CEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AEKKYKEILKVNPKDSRAFYGLAIIYDNKEEYKKAIKLYEKAIEYDKNYNRAYFFLAGAY
HHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
DNVGEKEKAIKCYEKVISLDEKDFWSYVNLSSIYEEAGFLEKALCLADKALELYPNHYMP
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LFNKGVVYKKLNKLEEAISNYKLSIEDNENYSYSYLNLAVIYKELKDYKKAINIISEGIL
HHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNTEEGFLYYNRACYYTYLKEYEKAMKDLYKAVELYPGFVKYIKVDEELHILKDRKDFMN
CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHEECCHHHHHHHHHHHHH
LIK
HCC
>Mature Secondary Structure
MQLYKINNYKVIAKNFYRERNIIKTLEFYNKAYNTPMGSKDVELLLDMALVYDELEEYEK
CEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AEKKYKEILKVNPKDSRAFYGLAIIYDNKEEYKKAIKLYEKAIEYDKNYNRAYFFLAGAY
HHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
DNVGEKEKAIKCYEKVISLDEKDFWSYVNLSSIYEEAGFLEKALCLADKALELYPNHYMP
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LFNKGVVYKKLNKLEEAISNYKLSIEDNENYSYSYLNLAVIYKELKDYKKAINIISEGIL
HHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNTEEGFLYYNRACYYTYLKEYEKAMKDLYKAVELYPGFVKYIKVDEELHILKDRKDFMN
CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHEECCHHHHHHHHHHHHH
LIK
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]