Click here to switch to the map view.

The map label for this gene is 226947930

Identifier: 226947930

GI number: 226947930

Start: 847492

End: 848055

Strand: Reverse

Name: 226947930

Synonym: CLM_0788

Alternate gene names: NA

Gene position: 848055-847492 (Counterclockwise)

Preceding gene: 226947943

Following gene: 226947929

Centisome position: 20.41

GC content: 27.13

Gene sequence:

>564_bases
ATGAAAATTGACGATAAAAACTTTTTATTAGAGCTTAAGAATAAAAATCCTAAGGCCTTAGAATTCATAATTAATACTTA
CTGCAACTTAGTTTTTAAAATTGTGCTAAACGTACTAGGAGCCGATAACTATGAAAATGTAAAAGAATGTGTTAATGATA
TATATCTTCTAATATGGAATAAAAACCACTTATATAATCCTGAAAAATCTTCATTTAAGAATTGGCTTTTAGCTGTAAGT
AAATATAAGGCTATAGATTATAAAAGAAGCTTATCTAAAGTGGACAGCCTTCAGATTGAAGAGCCAGTATTAATTTCAAA
GATTGATGTTGAAAATGAATATATTTTAAAAGAGAAAAAAGAAGAATTAATAAAGCTTTTACAACGTGAGCATGAACTGG
ATAGAGAACTATTTATACGAAAATACATTTTAGATCAAGATATGGACAGCATATGTAAAAAATTTAATTTATCCAAAGGC
GCTGTTTACAATAGATTGTGGCGTACTAAAAACTCACTTATAAGGAAATTAAATATTTCAAGTGAAGTGGAGGTATCAAA
ATGA

Upstream 100 bases:

>100_bases
TATTATAGTAAAAATGTTAAAATATAAGCATAAATTTTGTGAAATACTGATCATATTATCCGTATTAATTAGTGATAGAA
CAAAACGAAAGGAGTTAAAA

Downstream 100 bases:

>100_bases
AACTAAATTTAAATGAAGATGATATTTTAATGCTTTTAAATGATATTACTATAAACGAAAATGAATTTAGCGATGTAGAT
CTTAATGAAATTGAAAAGAA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor; RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKIDDKNFLLELKNKNPKALEFIINTYCNLVFKIVLNVLGADNYENVKECVNDIYLLIWNKNHLYNPEKSSFKNWLLAVS
KYKAIDYKRSLSKVDSLQIEEPVLISKIDVENEYILKEKKEELIKLLQREHELDRELFIRKYILDQDMDSICKKFNLSKG
AVYNRLWRTKNSLIRKLNISSEVEVSK

Sequences:

>Translated_187_residues
MKIDDKNFLLELKNKNPKALEFIINTYCNLVFKIVLNVLGADNYENVKECVNDIYLLIWNKNHLYNPEKSSFKNWLLAVS
KYKAIDYKRSLSKVDSLQIEEPVLISKIDVENEYILKEKKEELIKLLQREHELDRELFIRKYILDQDMDSICKKFNLSKG
AVYNRLWRTKNSLIRKLNISSEVEVSK
>Mature_187_residues
MKIDDKNFLLELKNKNPKALEFIINTYCNLVFKIVLNVLGADNYENVKECVNDIYLLIWNKNHLYNPEKSSFKNWLLAVS
KYKAIDYKRSLSKVDSLQIEEPVLISKIDVENEYILKEKKEELIKLLQREHELDRELFIRKYILDQDMDSICKKFNLSKG
AVYNRLWRTKNSLIRKLNISSEVEVSK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22250; Mature: 22250

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDDKNFLLELKNKNPKALEFIINTYCNLVFKIVLNVLGADNYENVKECVNDIYLLIWN
CCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEC
KNHLYNPEKSSFKNWLLAVSKYKAIDYKRSLSKVDSLQIEEPVLISKIDVENEYILKEKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
EELIKLLQREHELDRELFIRKYILDQDMDSICKKFNLSKGAVYNRLWRTKNSLIRKLNIS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SEVEVSK
CCCCCCC
>Mature Secondary Structure
MKIDDKNFLLELKNKNPKALEFIINTYCNLVFKIVLNVLGADNYENVKECVNDIYLLIWN
CCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEC
KNHLYNPEKSSFKNWLLAVSKYKAIDYKRSLSKVDSLQIEEPVLISKIDVENEYILKEKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
EELIKLLQREHELDRELFIRKYILDQDMDSICKKFNLSKGAVYNRLWRTKNSLIRKLNIS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SEVEVSK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA