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The map label for this gene is ydeM [C]

Identifier: 226947766

GI number: 226947766

Start: 667302

End: 668339

Strand: Direct

Name: ydeM [C]

Synonym: CLM_0615

Alternate gene names: 226947766

Gene position: 667302-668339 (Clockwise)

Preceding gene: 226947765

Following gene: 226947767

Centisome position: 16.06

GC content: 27.84

Gene sequence:

>1038_bases
ATGAATGTTACAATTTTTTTTACTCGTAATTGTAATATGAATTGTAAATATTGTTATGAGGGTAGTAAATACTCTAAGGA
TATAAGTAACTCTGTTTTAAAACAGGTTATTCCATTTATTACTAAGCATATGAAAAAGATTAAAGATAATAAATTATCTA
TTGTAACGCATGGGGGAGAACCATTAATGGCCTATGATAAGATTAAGGCTTTTGTTAAACAAACAAAAGAGGTTTTACCA
AATGTAGAATTTTCTATGACTACCAACTGTACTATTTTAGATGATGATATTTTAAATTTTATAATAAAAGAATATGATAA
TATCTCAGTTAGTATTGATGGGACAAGAGAGGCACATGACCTAAATCGAATTCTTAAAAATAAGAAGGGATCTTATGATA
TAGTTATCCCCAACGCTTTAAAAATATTAAGATATAGGCCTGATACAATTGCAAGGATGACTGTAAATAGTGATAATGTA
AAATATTTATTTCAAGGTGTAAAGGAATTAGTTGAAATGGGATTCAGTCATATAATGCCAACTCCAGATGAATTTGATAC
AAATTGGGATGAAAAAGCATTAGAAGAGCTTCATAAACAAGGCAAACTTATTTCAGATTATGTTGCAATATATTCAGGTA
ATAGAGAACTTGATATTGGATTCATTGATAATGCAACATGTAAAATGAAAAATTCATGTTGTGATGGGGGTATTACAACT
ATAACAATTGATACAGATGGTAAAGTATATCCTTGTATAATAGCAAATGGATTAAAAAAATTTTGTTTAGGGGATGTTTT
TAAGGGAATTGATGGAAACAAGATGAAACAAGTTCACCTACAGGATCAACAATCAATTTTAGAATGTTTAGGATGTAAAA
GATACGACTATTGTACAACTACAAGATGTAAAATAATTAATAAAATTAAGACAGGAAATTTTAATGAAGCTTCCCCAATA
ACCTGTAATTTAGAGAACATATCAGTAGCTTTAGCGCTATATGAAAATGAAAAGAGTAAAGATATTGATTTTAAATAA

Upstream 100 bases:

>100_bases
GATGGTATATTTGATAAAAGGTGTCAGTATATGAAAAAATTATTACAGCCTGCCTATGAATAATAGAAGTATATTTTAAA
TTAAGAAAGTAGGTTTTTAT

Downstream 100 bases:

>100_bases
TTATATTTTTTAATATCTATTAATATAAATTTGATTTTTAAAATTGATCATAGGGATTATGTCATTAATCTAAATATTAT
GTTTATCACACATAATATTT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: AnSME; Cys-type sulfatase-activating enzyme [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNVTIFFTRNCNMNCKYCYEGSKYSKDISNSVLKQVIPFITKHMKKIKDNKLSIVTHGGEPLMAYDKIKAFVKQTKEVLP
NVEFSMTTNCTILDDDILNFIIKEYDNISVSIDGTREAHDLNRILKNKKGSYDIVIPNALKILRYRPDTIARMTVNSDNV
KYLFQGVKELVEMGFSHIMPTPDEFDTNWDEKALEELHKQGKLISDYVAIYSGNRELDIGFIDNATCKMKNSCCDGGITT
ITIDTDGKVYPCIIANGLKKFCLGDVFKGIDGNKMKQVHLQDQQSILECLGCKRYDYCTTTRCKIINKIKTGNFNEASPI
TCNLENISVALALYENEKSKDIDFK

Sequences:

>Translated_345_residues
MNVTIFFTRNCNMNCKYCYEGSKYSKDISNSVLKQVIPFITKHMKKIKDNKLSIVTHGGEPLMAYDKIKAFVKQTKEVLP
NVEFSMTTNCTILDDDILNFIIKEYDNISVSIDGTREAHDLNRILKNKKGSYDIVIPNALKILRYRPDTIARMTVNSDNV
KYLFQGVKELVEMGFSHIMPTPDEFDTNWDEKALEELHKQGKLISDYVAIYSGNRELDIGFIDNATCKMKNSCCDGGITT
ITIDTDGKVYPCIIANGLKKFCLGDVFKGIDGNKMKQVHLQDQQSILECLGCKRYDYCTTTRCKIINKIKTGNFNEASPI
TCNLENISVALALYENEKSKDIDFK
>Mature_345_residues
MNVTIFFTRNCNMNCKYCYEGSKYSKDISNSVLKQVIPFITKHMKKIKDNKLSIVTHGGEPLMAYDKIKAFVKQTKEVLP
NVEFSMTTNCTILDDDILNFIIKEYDNISVSIDGTREAHDLNRILKNKKGSYDIVIPNALKILRYRPDTIARMTVNSDNV
KYLFQGVKELVEMGFSHIMPTPDEFDTNWDEKALEELHKQGKLISDYVAIYSGNRELDIGFIDNATCKMKNSCCDGGITT
ITIDTDGKVYPCIIANGLKKFCLGDVFKGIDGNKMKQVHLQDQQSILECLGCKRYDYCTTTRCKIINKIKTGNFNEASPI
TCNLENISVALALYENEKSKDIDFK

Specific function: Involved in 'Cys-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of cysteine into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical chemical mechanism initiated via the reduc

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 39220; Mature: 39220

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTIFFTRNCNMNCKYCYEGSKYSKDISNSVLKQVIPFITKHMKKIKDNKLSIVTHGGE
CCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
PLMAYDKIKAFVKQTKEVLPNVEFSMTTNCTILDDDILNFIIKEYDNISVSIDGTREAHD
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECHHHHHHHHHHCCCEEEEECCCCHHHH
LNRILKNKKGSYDIVIPNALKILRYRPDTIARMTVNSDNVKYLFQGVKELVEMGFSHIMP
HHHHHHCCCCCEEEECCCHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
TPDEFDTNWDEKALEELHKQGKLISDYVAIYSGNRELDIGFIDNATCKMKNSCCDGGITT
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHEEECCEEEEEEEECCCCEEECCCCCCCCEEE
ITIDTDGKVYPCIIANGLKKFCLGDVFKGIDGNKMKQVHLQDQQSILECLGCKRYDYCTT
EEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCC
TRCKIINKIKTGNFNEASPITCNLENISVALALYENEKSKDIDFK
HHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNVTIFFTRNCNMNCKYCYEGSKYSKDISNSVLKQVIPFITKHMKKIKDNKLSIVTHGGE
CCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
PLMAYDKIKAFVKQTKEVLPNVEFSMTTNCTILDDDILNFIIKEYDNISVSIDGTREAHD
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECHHHHHHHHHHCCCEEEEECCCCHHHH
LNRILKNKKGSYDIVIPNALKILRYRPDTIARMTVNSDNVKYLFQGVKELVEMGFSHIMP
HHHHHHCCCCCEEEECCCHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
TPDEFDTNWDEKALEELHKQGKLISDYVAIYSGNRELDIGFIDNATCKMKNSCCDGGITT
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHEEECCEEEEEEEECCCCEEECCCCCCCCEEE
ITIDTDGKVYPCIIANGLKKFCLGDVFKGIDGNKMKQVHLQDQQSILECLGCKRYDYCTT
EEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCC
TRCKIINKIKTGNFNEASPITCNLENISVALALYENEKSKDIDFK
HHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA