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The map label for this gene is 226947259

Identifier: 226947259

GI number: 226947259

Start: 47963

End: 48559

Strand: Reverse

Name: 226947259

Synonym: CLM_0056

Alternate gene names: NA

Gene position: 48559-47963 (Counterclockwise)

Preceding gene: 226947260

Following gene: 226947258

Centisome position: 1.17

GC content: 28.14

Gene sequence:

>597_bases
TTGGATATACAAGAATCTTTAAAGAATAAAATTAAAAATATTTCAGAAGAATATGCAGGTGATAAAACAGGTGGCTACAT
AACAGGTGACGGACCTATACCATGTGATATTCTATTCATAGGAGAAGCCCCAGGTAAAAATGAAGTAGAAGAAGGTAAAC
CTTTTGTAGGTATGGCTGGTAAAAATTTTGAAAAATATTTAAATTCTATAGGTCTTAAAAGGGAATTTATTAGAATTACT
AATACTTGTTTTTTTAGGCCTATAAAAATCAAAGAAGGTAAAAATGGAAGAATATCTATAAGCAATAGACCACCTAAGGT
TTCAGAAATATCCTTATTTAGTTCTATCCTTGATGAAGAGATTAATTTAGTAAACCCTAAATTAATAATTACATTAGGAA
ATGTTCCCTTGAAAAGACTAACAAGTTTTAAGTCCATTGGTGATTGTCATGGTAATATTTATTTTATTGAAAATTTAAAT
AGATATGTATTTCCAATGTATCATCCATCAGCTTTGACCTACAATAGAAGTGAAGAATTTCATAAAATCTATGAAAATGA
TTGGGTTAAATTAAGAGAAGCTCTAGACAAGATTTAA

Upstream 100 bases:

>100_bases
AAAAGAATACTCTTATTTAACTACATTAATAGTTATGCTAATAATGTAAATTTAAAAGTAAATGAAATTTATATAAATAT
ATAGGAAGGAGTTTTTTAAA

Downstream 100 bases:

>100_bases
ATCTAAGGCCCTTGTATTCATAAAAATCTATATTATGAGACTAATATAGATTTTTATTTTATTATTTCATGTAACATTGT
ATATATTTATAATTCTCCAA

Product: uracil-DNA glycosylase family protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase; Phage SPO1 DNA Polymerase-Like Protein; Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Family Protein; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase-Like Protein; Uracil DNA Glycosylase; Phage Spo1 DNA Polymerase-Related Protein; Uracil-DNA Glycosylase Superfamily; DNA-Directed DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage DNA Polymerase; Uracil-DNA Glycosylase C-Terminal Domain Protein; DNA Glycosylase; Uracil-DNA Glycosylase C-Terminal; Uracil-DNA Glycosylase-Related Protein; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; Uracil DNA Glycosylase Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Uracyl DNA Glycosilase; Bacteriophage-Related DNA Polymerase; Helicase/Glycosylase; Phage DNA Polymerase-Related Protein; N-Terminus Of Bacteriophage-Type DNA Polymerase

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MDIQESLKNKIKNISEEYAGDKTGGYITGDGPIPCDILFIGEAPGKNEVEEGKPFVGMAGKNFEKYLNSIGLKREFIRIT
NTCFFRPIKIKEGKNGRISISNRPPKVSEISLFSSILDEEINLVNPKLIITLGNVPLKRLTSFKSIGDCHGNIYFIENLN
RYVFPMYHPSALTYNRSEEFHKIYENDWVKLREALDKI

Sequences:

>Translated_198_residues
MDIQESLKNKIKNISEEYAGDKTGGYITGDGPIPCDILFIGEAPGKNEVEEGKPFVGMAGKNFEKYLNSIGLKREFIRIT
NTCFFRPIKIKEGKNGRISISNRPPKVSEISLFSSILDEEINLVNPKLIITLGNVPLKRLTSFKSIGDCHGNIYFIENLN
RYVFPMYHPSALTYNRSEEFHKIYENDWVKLREALDKI
>Mature_198_residues
MDIQESLKNKIKNISEEYAGDKTGGYITGDGPIPCDILFIGEAPGKNEVEEGKPFVGMAGKNFEKYLNSIGLKREFIRIT
NTCFFRPIKIKEGKNGRISISNRPPKVSEISLFSSILDEEINLVNPKLIITLGNVPLKRLTSFKSIGDCHGNIYFIENLN
RYVFPMYHPSALTYNRSEEFHKIYENDWVKLREALDKI

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 22566; Mature: 22566

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIQESLKNKIKNISEEYAGDKTGGYITGDGPIPCDILFIGEAPGKNEVEEGKPFVGMAG
CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCCCCCCHHCCCCEEEECC
KNFEKYLNSIGLKREFIRITNTCFFRPIKIKEGKNGRISISNRPPKVSEISLFSSILDEE
CCHHHHHHHCCCHHHHHHHHHHHEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH
INLVNPKLIITLGNVPLKRLTSFKSIGDCHGNIYFIENLNRYVFPMYHPSALTYNRSEEF
HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCEEEECCCHHH
HKIYENDWVKLREALDKI
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIQESLKNKIKNISEEYAGDKTGGYITGDGPIPCDILFIGEAPGKNEVEEGKPFVGMAG
CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCCCCCCHHCCCCEEEECC
KNFEKYLNSIGLKREFIRITNTCFFRPIKIKEGKNGRISISNRPPKVSEISLFSSILDEE
CCHHHHHHHCCCHHHHHHHHHHHEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH
INLVNPKLIITLGNVPLKRLTSFKSIGDCHGNIYFIENLNRYVFPMYHPSALTYNRSEEF
HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCEEEECCCHHH
HKIYENDWVKLREALDKI
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA