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The map label for this gene is rpoD

Identifier: 226946707

GI number:

Start: 4770914

End: 4772776

Strand: Direct

Name: rpoD

Synonym: Avin_47000

Alternate gene names: NA

Gene position: NA

Preceding gene: 226946706

Following gene: 226946708

Centisome position: NA

GC content: NA

Gene sequence:

>1863_bases
ATGTCCGTAAAAGCTCAACAGCAGTCTCGCATCAAAGAGTTGATCGCTCGCGGCCGCGAACAGGGTTACCTGACCTATGC
CGAGGTCAACGACCACCTGCCCGAGGATATTTCCGATCCGGAACAGGTGGAAGACATCATCCGCATGATCAACGACATGG
GGATCAACGTATTCGAAAGTGCCCCGGATACGGATGCCCTGTTGTTGGCCGAAGCCGACACCGACGAAGCTGCCGCCGAG
GAAGCCGCCGCGGCCCTGGCCGCCGTGGAAACCGACATCGGTCGTACCACCGACCCGGTGCGCATGTACATGCGCGAAAT
GGGTACCGTGGAACTGCTCACCCGCGAAGGCGAAATCGAGATCGCCAAGCGCATCGAGGAAGGCATCCGCGAGGTGATGA
GCGCCATCGCCCACTTCCCGGGCACCGTGGACGGCATCCTCGCGGAATACCAGCGCGTCACCAGCGAAGGCGGCCGCCTG
TCCGACATCCTCAGCGGCTACATCGATCCCGACGACGATTCGGCGGTGCCTGCCGAGGCCGAGGTTCCCGTCGATCTCAA
GAGCAAGAGCGCCGCGACCCCCGCCGCATCCGAGGACGAGGACGAGGACGAGAGCGAGGAAAGCGACAGCGACGACGAGG
AAGGCGACGGTGGTCCCGACCCGGAGATCGCCCGCCAGCGCTTCGGCGCTGTCGCCGAGCAGTTGGGCAGGACCCGTGTG
GCTCTCGAACGGCACGGGCGCCACAGCGTCGAGGGCCTTGAGGCGCTGCAGGCGCTGGCCAGCCTGTTCATGCCGATCAA
GCTGGTGCCCAAACAGTACGACACCCTGGTCGAGCAGGTGCGTGACGCCCTGACCCGCGTGCGCGCCCAGGAACGCGCGA
TCATGCAGTTGTGCGTGCGCGATGCGCGCATGCCGCGCGCCGACTTCCTGCGCCAGTTTCCCGGCAACGAGACCGATCAG
GACTGGGTCGACCTCCTCGCCAAGGGCAAGGCCAAGTACGCCGAAGCCCTGGGCAATCTGGCCGACGACATCAAGCAGTG
CCAGCAGAAGCTGATCGACCTCGAGCAGAAGGTCGGCCTGACCATCGCCGAAATCAAGGACATCAACCGCCAGATGTCCA
TCGGCGAAGCCAAGGCCCGCCGCGCCAAGAAGGAAATGGTCGAGGCCAACCTGCGCCTGGTGATCTCCATCGCCAAGAAA
TACACCAACCGCGGCCTGCAGTTCCTCGATCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGA
ATACCGCCGCGGCTACAAGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGGCGATCACCCGCTCGATCGCCGACCAGG
CGCGCACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGCTCAACCGCATCTCCCGCCAGATGCTCCAGGAG
ATGGGCCGCGAACCCACGCCGGAAGAACTCGGCGAGCGCATGGACATGCCCGAGGACAAGATCCGCAAGGTGCTGAAGAT
CGCCAAGGAACCGATCTCCATGGAAACCCCGATCGGCGACGACGAGGACTCGCATCTGGGCGACTTCATCGAGGACTCGA
CCATGCAGTCGCCGATCGAGGTGGCGACCGTGGAAAGCCTCAAGGAGGCCACCCGCGAAGTCCTCGCCGGCCTCACCGCC
CGGGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGACATGAACACCGACCACACCCTCGAGGAGGTCGGCAAGCAGTT
CGACGTGACCCGCGAGCGCATCCGTCAGATCGAGGCCAAGGCCCTGCGCAAGCTGCGCCACCCCTCGCGAAGCGAGCACC
TGCGCTCCTTCCTTGACGAGTGA

Upstream 100 bases:

>100_bases
GTATCTCCCATCCCCCCGACCTCAACTGGCGTGTGAGGTCAAGCATCCGTTATAATATTCAGCTTTTCAGCCCGCCAGAA
AATTCAGTGGATAGGGTGTC

Downstream 100 bases:

>100_bases
CAGCAAGACCCCCGGCTCGCCGGGGGTCTTGCTTTCCAGCTCGCCGAGCGGACGTAGCCATGTCCTGTCTTATACTGCAT
CGACCGACTGCCCAGACCTC

Product: RNA polymerase sigma factor RpoD

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>620_residues
MSVKAQQQSRIKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDTDALLLAEADTDEAAAE
EAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDGILAEYQRVTSEGGRL
SDILSGYIDPDDDSAVPAEAEVPVDLKSKSAATPAASEDEDEDESEESDSDDEEGDGGPDPEIARQRFGAVAEQLGRTRV
ALERHGRHSVEGLEALQALASLFMPIKLVPKQYDTLVEQVRDALTRVRAQERAIMQLCVRDARMPRADFLRQFPGNETDQ
DWVDLLAKGKAKYAEALGNLADDIKQCQQKLIDLEQKVGLTIAEIKDINRQMSIGEAKARRAKKEMVEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
MGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVATVESLKEATREVLAGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLDE

Sequences:
NA

Specific function: NA

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA