Click here to switch to the map view.

The map label for this gene is rpoC

Identifier: 226305223

GI number:

Start: 1869656

End: 1873612

Strand: Direct

Name: rpoC

Synonym: RER_17340

Alternate gene names: NA

Gene position: NA

Preceding gene: 226305222

Following gene: 226305225

Centisome position: NA

GC content: NA

Gene sequence:

>3957_bases
GTGCTCGACGTCAACTTCTTCGATGAACTCCGCATTGGCTTGGCCAGTGCAGAGGACATCCGCAATTGGTCCTACGGCGA
GGTCAAGAAGCCGGAGACCATCAACTACCGCACGCTCAAGCCCGAGAAGGACGGCCTCTTCTGCGAGAAGATCTTCGGCC
CCACCCGGGACTGGGAGTGCTACTGCGGTAAGTACAAGCGTGTCCGCTTCAAGGGCATCATCTGTGAGCGCTGTGGCGTC
GAGGTCACTCGCGCCAAGGTTCGTCGTGAGCGTATGGGTCACATCGAACTGGCCGCACCGGTCACGCACATCTGGTACTT
CAAGGGTGTTCCGAGCCGTCTCGGTTACCTGCTCGACCTGGCTCCGAAGGATCTCGAAAAGATCATCTACTTCGCTGCCT
ACGTCATCGTCGGCGTCGACGAGGAGCTCCGTCACAACGAGCTGTCCACCCTCGAAGCCGAGATGCAGGTCGAGAAGAAG
ACCGTCGCAGATCAGCGCGACGCCGATCTCGAGGCACGTGCGCAGAAGCTCGAAGCCGACATCGCCGAGCTCGAGGCAGA
GGGCGCGAAGTCCGATGTCCGCCGCAAGGTCAAGGACGGCGGCGAGCGCGAAATGCGTCAGCTCCGTGACCGCGCGCAGC
GTGAGCTGGATCGTCTCGACGAGATCTGGACCACCTTCACCAAGCTGAGCGTCAAGCAGCTCATCATCGACGAGCTCCTG
TACCGCGAGCTGGTCGACCGTTACGGCGAGTACTTCACGGGTGCGATGGGCGCAGAGTCCATCCAGATCCTGATGCAGAA
CTTCGACCTCGACGCCGAGGCAGAGTCTCTCCGTGAGACCATCCGCAGCGGCAAGGGCCAGAAGAAGCTGCGTGCACTCA
AGCGCCTCAAGGTGGTTGCGGCATTCCAGACCAACGGCAACTCGCCGATGGGCATGGTCCTCAACGCTGTTCCGGTGATC
CCGCCGGAGCTTCGCCCGATGGTTCAGCTCGACGGTGGACGTTTCGCGACGTCCGACCTCAACGACCTGTACCGCCGCGT
CATCAACCGCAACAACCGCCTCAAGCGACTGATCGACCTCGGTGCTCCCGAGATCATCGTCAACAACGAGAAGCGGATGC
TGCAGGAGTCGGTCGACGCCCTGTTCGACAACGGTCGTCGTGGACGTCCGGTCACCGGACCGGGTAACCGCCCGCTGAAG
TCCCTGAGCGATCTGCTCAAGGGCAAGCAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGCGTCGACTACTCGGGTCG
TTCCGTGATCGTCGTCGGTCCTCAGCTCAAGCTGCACCAGTGTGGTCTGCCCAAGCTGATGGCTCTCGAGCTGTTCAAGC
CGTTCGTGATGAAGCGTCTGGTCGATCTCAACCACGCGCAGAACATCAAGTCGGCCAAGCGCATGGTCGAGCGCAAGCGC
GTCCAGGTGTGGGACGTCCTCGAAGAGGTCATCGCCGAGCACCCCGTGCTGCTCAACCGTGCACCTACGCTGCACCGTCT
GGGTATCCAGGCATTCGAGCCGCAGCTCGTCGAGGGCAAGGCCATTCAGCTCCACCCGCTGGTGTGTGAGGCCTTCAACG
CCGACTTCGACGGTGACCAGATGGCTGTTCACCTCCCGCTGTCGGCAGAGGCTCAGGCCGAGGCACGCATCCTGATGCTG
TCCTCGAACAACATCCTCTCGCCTGCTTCGGGTCGCCCGCTCGCCATGCCGCGTCTGGACATGGTCACGGGTCTGTTCCA
CCTGACCCGTCTCGACGAGGGTGTCACCGGTGAGCTCGTTGCTCCGACCAACGACGAGGCAGAGCAGGGCGTGTACTCCT
CGCCCGCCGAGGCTCAGATGGCAGTCGACCGCGGCGCGCTCTCGGTTCAGGCTCAGATCAAGGTGCGTCTGACGCAGCAG
CGTCCGCCGCGCGACCTCGAGAACGAACTGTTCCCCGAGGGCTGGAAATACGGTGACGGCTGGACCGCCACCACGACGCT
CGGCCGTGTGCTCTTCAACGAGCTGCTTCCGGCGGACTACCCGTTCGTCAACGAGCAGATGCCGAAGAAGCGCCAGGCGA
CGATCATCAACGATCTCGCCGAGCGGTACCCGATGATCGTGGTTGCTCAGACCGTCGACAAGCTCAAGGACGTCGGGTTC
TACTGGGCCACCCGTTCGGGTGTCACGGTCTCGATTTCCGACGTGCTCGTGCCGCCGGAGAAGCCTGCCATCATCGAGGA
CTTCGAGGCTCAGGCCGACAAGATCGAGAAGCAGTACCAGCGTGGTGCTCTGGACAAGAAGGAGCGCAACAGCGCTCTGG
TCACCATTTGGCAGGAAGCGACCGACAAGGTCGGCAAGGCCATGGAGGCTCACTTCCCCGACAGCAACCCGATCCCGATG
ATCGTGAAGTCCGGCGCAGCCGGCAACATGACTCAGGTTCGCTCGCTCGCCGGTATGAAGGGTCTGGTGACAAACCCGAA
GGGTGAGTTCATCCCGCGTCCGATCAAGTCTTCCTTCAAGGAAGGCCTGACCGTTCTCGAGTACTTCATCAACACGCACG
GTGCTCGTAAGGGTCTGGCCGATACCGCACTCCGCACCGCCGACTCGGGTTACCTGACCCGTCGTCTGGTGGACGTTTCG
CAGGACGTCATCGTCCGCGAGGTCGACTGTGGAACAGAGCGCGGCATCGTCACCACGATCGCCGAGAAGCAGGCCGACGG
CACGATGATCCGCGATGCTCACGTGGAGACCAGCACGTACGCCCGTACCTTGGCGGCCGATGCAGTCGACGCGAACGGCA
CCGTCATCGTCGAGCGTGGCCACGATCTCGGTGACCCCGCGATCGATGCTCTGCTCGAAGCCGGCATCACGACGGTCAAG
GTCCGCTCGGTCCTGACCTGCACCACCGGCACCGGCGTTTGCGCCACTTGCTACGGCCGTTCGATGGCCACCGGCAAGCT
GGTCGACATCGGTGAGGCTGTCGGTATCGTCGCCGCACAGTCGATCGGTGAGCCCGGTACCCAGCTGACCATGCGTACCT
TCCACCAGGGTGGTGTCGCAGGAGATGACATCACCGGCGGTCTGCCGCGTGTCCAGGAGCTGTTCGAGGCACGTGTGCCC
AAGGGCAAGGCTCCTATCGCGGACGTCACCGGTCGGGTACAGCTCGAAGACGGCGATCGTTTCTACAAGATCACCATCGT
TCCGGACGACGGCGGCGAAGAGGTTGTCTACGACAAGCTCAGCAAGCGTCAGCGTCTGCGCGTCTTCAAGCATGCCGACG
GTCGCGAAAGCCTCTTGGCTGACGGTGACCACGTCGAGGTCGGACAGCAGCTCATGGAAGGTGCTGCCGATCCCCACGAG
GTCCTGCGAGTCATGGGTCCGCGTCAGGTTCAGATCCACTTGGTCAACGAGGTCCAGGAGGTGTACCGGAGCCAGGGTGT
GTCGATCCACGACAAGCACATCGAGGTCATCGTGCGCCAGATGCTTCGTCGCGTGACGATCATCGATTCCGGTGCCACCG
AGTTCCTGCCCGGTTCGCTCACCGAGCGCGCCGAGTTCGAGTCGGCAAACCGCCGCGTTGTCGCCGAGGGTGGCGAGCCC
GCAGCCGGCCGTCCGGTGCTCATGGGTATCACGAAGGCGTCGCTCGCGACGGATTCGTGGCTGTCCGCGGCATCGTTCCA
GGAGACCACTCGTGTCTTGACCGACGCGGCTATCAACTGCCGCTCGGACAAGCTGATCGGTCTGAAGGAAAATGTCATCA
TCGGCAAGCTGATCCCTGCCGGTACCGGTATCAACCGTTACCGCAACATCCAGGTTCAGCCCACCGAAGAGGCACGCGCC
GCTGCTTACGCAGTGCCGTCGTACGACGACCAGTACTACAGCCCGGACGGCTTCGGCCAGAACACCGGTGCTGCAGTTCC
GCTGGACGACTACGGCTTCAGCAACGACTACCGCTAG

Upstream 100 bases:

>100_bases
GCTCTTGAAAGAGTGGCCCGGGGGCGTAGTTCACATTTGAATTGGCAGTCAGGTTGCCGGGTGACCGGCAACCGTAACCC
CAACGGGGAAAGGAAGTTAC

Downstream 100 bases:

>100_bases
TCGGGTAGTCGTATGTGACGACTACCGCTAAGCGTTAGTTCGTAGAAAATCCCCCCACCTCGAAAGAGGTGGGGGGATTT
TTCATCTCGCTCGCTTCAGG

Product: DNA-directed RNA polymerase subunit beta'

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1318_residues
MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGV
EVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKK
TVADQRDADLEARAQKLEADIAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL
YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVAAFQTNGNSPMGMVLNAVPVI
PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLK
SLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR
VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILML
SSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELVAPTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQ
RPPRDLENELFPEGWKYGDGWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQEATDKVGKAMEAHFPDSNPIPM
IVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFKEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVS
QDVIVREVDCGTERGIVTTIAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITGGLPRVQELFEARVP
KGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDKLSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHE
VLRVMGPRQVQIHLVNEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARA
AAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR

Sequences:
NA

Specific function: NA

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA